CN189044

Overview
NameCN189044
Unique NameCN189044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_CAEEL (Density-regulated protein homolog OS=Caenorhabditis elegans GN=Y47D3A.21 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 57/186 (30.65%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   89 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGKK 646
            P++++YC  CS+P EYC++    + C+ W  +NAPEL   L                           GA + Q ++S         GGK K    Q+V +++  R K K +T++KGL  F + L  ASK   +KFA G+SV    T  ++I +QGD+  D+++ I + W  V +  I  + D K+
Sbjct:   23 PLKMVYCGQCSMPPEYCDYSGQTDVCRAWATQNAPELLEGL--EISDEPAADGDEKKKQKRGGKGSKTGAAAAQAAAS---------GGKKKGGGPQKVTLQREPRGK-KSVTVIKGLATFDIDLKVASKLFAQKFACGSSV----TGADEIVIQGDVKDDLLDLIPEKWKQVTDEQIDDLGDKKR 192          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_YEAST (Translation machinery-associated protein 22 OS=Saccharomyces cerevisiae GN=TMA22 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 47/163 (28.83%), Postives = 78/163 (47.85%), Query Frame = 2
Query:   98 VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 586
            V+YC ICS P EYCEF    ++CK WL +N  +LY  L                          +          ++++  R    ++ KK   +V+I++  R KRK I  + GL++F + +   +K    +FATG SV K   +KE++ +QGD+  ++  +I
Sbjct:    5 VIYCGICSYPPEYCEFSGKLKRCKVWLSENHADLYAKLYGTDDNTQEVEAVTNKLAESSIGEAREEKLEKDLLKIQKKQENR-EQRELAKKLSSKVIIKREARTKRKFIVAISGLEVFDIDMKKLAKTFASRFATGCSVSKNAEKKEEVVIQGDVMDEVETYI 166          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_YEAS7 (Translation machinery-associated protein 22 OS=Saccharomyces cerevisiae (strain YJM789) GN=TMA22 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 47/163 (28.83%), Postives = 78/163 (47.85%), Query Frame = 2
Query:   98 VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFI 586
            V+YC ICS P EYCEF    ++CK WL +N  +LY  L                          +          ++++  R    ++ KK   +V+I++  R KRK I  + GL++F + +   +K    +FATG SV K   +KE++ +QGD+  ++  +I
Sbjct:    5 VIYCGICSYPPEYCEFSGKLKRCKVWLSENHADLYAKLYGTDDNTQEVEAVTNKLAESSIGEAREEKLEKDLLKIQKKQENR-EQRELAKKLSSKVIIKREARTKRKFIVAISGLEVFDIDMKKLAKTFASRFATGCSVSKNAEKKEEVVIQGDVMDEVETYI 166          
The following BLAST results are available for this feature:
BLAST of CN189044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
DENR_CAEEL5.893e-1830.65Density-regulated protein homolog OS=Caenorhabditi... [more]
DENR_YEAST2.239e-1728.83Translation machinery-associated protein 22 OS=Sac... [more]
DENR_YEAS72.239e-1728.83Translation machinery-associated protein 22 OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189044 ID=CN189044; Name=CN189044; organism=Citrus sinensis; type=EST; length=733bp
GCGGTAGAGAACAAAAGAGAAGAGCAAATTGATCGGACAGAACCTGAATA
CAATAATATAATTTTACTGGATGGCAGAGAAACCTCAACCAGTGCGTGTT
CTGTATTGTTCAATATGTTCTCTTCCTGCGGAGTACTGTGAATTCGGTCC
TGACTTTGAGAAATGCAAACCTTGGTTGATCAAAAACGCTCCTGAATTAT
ACCCAGATCTCCTTAAAGAAGCAAATGAAAAGGAGGCTGAGAAGGTCTCT
GGGCAGCTTCAATTATTTGGTCTCTCTTCAGGCGGTGCTGATGGAGCTAC
TTCTGGGCAAACATCATCGTCTAAGCAAGAAGAAGTTAAACGTCTTCCTG
GTGGAAAAATAAAGAAGAAAGAAAGACAAGAAGTTGTTATTGAAAAAGTT
GTACGCAACAAGCGCAAATGTATAACCATTGTGAAGGGCCTGGACCTGTT
TGGTGTTAAACTTAGTGATGCTTCTAAAAAGCTTGGGAAAAAGTTTGCCA
CTGGAGCATCTGTTGTTAAGGGCCCAACTGAGAAAGAGCAAATTGATGTT
CAAGGGGACATATCCTATGACATTGTGGAATTCATTACAGACACCTGGCC
TGCTGTGCCCGAAACTGCTATATATTTCATTGAAGACGGGAAAAAGGTTG
CAGCCGCATAATGTTAGGAGCTTTTTCAAAAGGGTGGTAGTTTCAATTTG
ACAAAAAGGAGCCTATAAACTGCTCATTTTTTT
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