CN189041

Overview
NameCN189041
Unique NameCN189041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 9.706e-58
Identity = 101/158 (63.92%), Postives = 126/158 (79.75%), Query Frame = -2
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            +FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KIT FIKFD GNV MV GG N GRVG++ NRE+H GS + +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE  KR
Sbjct:   98 HFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.162e-57
Identity = 105/158 (66.46%), Postives = 127/158 (80.38%), Query Frame = -2
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            NFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL T KIT F+KF+ GN+VM TGGRN GRVG I +RE+H+G F+ +HI+DAL ++F TRL NVF IG+G K  +SLPKGKGIKLSI EE   R
Sbjct:   98 NFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEERDAR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.162e-57
Identity = 102/157 (64.97%), Postives = 129/157 (82.17%), Query Frame = -2
Query:  251 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 721
            FRL+YD KGRF +H I +EEAK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++ TNKI + IKFD GN+ M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR+ NVF IGKG+K +VSLP+GKG+KLSI EE  KR
Sbjct:   99 FRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.162e-57
Identity = 100/158 (63.29%), Postives = 126/158 (79.75%), Query Frame = -2
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            +FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++ EE  KR
Sbjct:   98 HFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.824e-57
Identity = 101/158 (63.92%), Postives = 125/158 (79.11%), Query Frame = -2
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            +FRL+YDTKGRF +  I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KI  FIKFD GNV MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE  KR
Sbjct:   98 HFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.688e-57
Identity = 99/158 (62.66%), Postives = 126/158 (79.75%), Query Frame = -2
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            +FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L++ EE  KR
Sbjct:   98 HFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.291e-57
Identity = 102/157 (64.97%), Postives = 127/157 (80.89%), Query Frame = -2
Query:  251 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 721
            FRL+YD KGRF +H I  EEAK+KLCKV+ V  G K +PY+ T+DGRTIRYPDPLIK ND+I+LD+ T KI +FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKGTK ++SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.073e-56
Identity = 102/157 (64.97%), Postives = 127/157 (80.89%), Query Frame = -2
Query:  251 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 721
            FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI + IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKG+K +VSLP+GKG+KLSI EE  KR
Sbjct:   99 FRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.073e-56
Identity = 99/158 (62.66%), Postives = 125/158 (79.11%), Query Frame = -2
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            +FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++  E  KR
Sbjct:   98 HFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.073e-56
Identity = 99/158 (62.66%), Postives = 125/158 (79.11%), Query Frame = -2
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            +FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++  E  KR
Sbjct:   98 HFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255          
The following BLAST results are available for this feature:
BLAST of CN189041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4Y2_PANTR9.706e-5863.9240S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4_YARLI2.162e-5766.4640S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_LYSTE2.162e-5764.9740S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4Y1_HUMAN2.162e-5763.2940S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_PONPY2.824e-5763.9240S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4Y1_GORGO3.688e-5762.6640S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4_BOMMO6.291e-5764.9740S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4_CARGR1.073e-5664.9740S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4Y1_PANTR1.073e-5662.6640S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA1.073e-5662.6640S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189041 ID=CN189041; Name=CN189041; organism=Citrus sinensis; type=EST; length=725bp
GCGGAAAATTCATTGCCAATAATATTGCCGCTGATAAAATAAAAGAGTCA
CCTGTTTCATCACAAAACTAAAATTGAAACCAGTATTAAAACTCAAAACT
TTATGATAACTAGTATCACCAACAAGAAAATCAAACAAGCAATCACAAAA
GTGTCAAACTGCAAAACTTTCATCTAGTAAACTTTCTAAAACCATATCGC
AAAGACCATGAAGTTTATCATTGGGCGGCTGCTGAAGTCGCCAGGGCTTG
TCTCTTCCTAGCCTCCTCAATGATGGATAGTTTAATACCCTTGCCCTTGG
GAAGAGAAACCCATGGCTTTGTACCCTTGCCAATGGTGAACACATTTCCA
AGACGAGTTGCAAACTCATGACCAAGAGCATCCTGGATGTGGATAGTTTC
AAAGCTACCCTTATGCTTTTCTCTGTTCTTAATGATTCCAACACGTCCTC
TGTTTCTCCCTCCAGTCACCATCACAACATTTCCAACATCAAACTTGATG
AACTCGGTGATCTTGTTAGTCTCCAGGTCCAGCTTGATGGTATCATTGGC
CTTGATGAGTGGGTCTGGGTAGCGAATAGTCCTCCCATCATAAGTGTTGA
TGTAAGGGATTCCCTTCTGCCCAAATTGCACTGATCGAACCTTGCAGAGC
TTGAACTTAGCCTCCTCATCCCTGATTGAATGAAGGCGGAACCGGCCCTT
GGTGTCGTAAAGGAGACGGAAGTTC
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