CN189041

Overview
NameCN189041
Unique NameCN189041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = -2
Query:  293 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 721
            FR+L      F+LH I +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G + ++ GGRN GRVG++K+ +K  G   T + ++DA G+ F T L  VF IG   +P +SLP+G
Sbjct:  100 FRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = -2
Query:  293 FRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGTKPWVSLPKG 691
            F LH I  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ +   ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T L  VF I     +PW+SLP+G
Sbjct:  110 FTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = -2
Query:  293 LHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 685
            L  I  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I +++    G + +V+GGRN GRVG I +  K    + +I  ++D  G++F T L  +F IG   KP + LP+G
Sbjct:  112 LIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV-EKPLIKLPEG 250          
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 49/143 (34.27%), Postives = 77/143 (53.85%), Query Frame = -2
Query:  293 LHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 685
            L  I  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ +   +I  +I  D G +V+++GGRN GRVG    I K   +H+     + I+D  G++F T L  VF IGK  +P + LP+G
Sbjct:  112 LIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250          
The following BLAST results are available for this feature:
BLAST of CN189041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4E_AERPE2.956e-1434.8730S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_HYPBU5.576e-1333.5730S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_DESK19.511e-1335.0030S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_STAMF6.165e-1234.2730S ribosomal protein S4e OS=Staphylothermus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189041 ID=CN189041; Name=CN189041; organism=Citrus sinensis; type=EST; length=725bp
GCGGAAAATTCATTGCCAATAATATTGCCGCTGATAAAATAAAAGAGTCA
CCTGTTTCATCACAAAACTAAAATTGAAACCAGTATTAAAACTCAAAACT
TTATGATAACTAGTATCACCAACAAGAAAATCAAACAAGCAATCACAAAA
GTGTCAAACTGCAAAACTTTCATCTAGTAAACTTTCTAAAACCATATCGC
AAAGACCATGAAGTTTATCATTGGGCGGCTGCTGAAGTCGCCAGGGCTTG
TCTCTTCCTAGCCTCCTCAATGATGGATAGTTTAATACCCTTGCCCTTGG
GAAGAGAAACCCATGGCTTTGTACCCTTGCCAATGGTGAACACATTTCCA
AGACGAGTTGCAAACTCATGACCAAGAGCATCCTGGATGTGGATAGTTTC
AAAGCTACCCTTATGCTTTTCTCTGTTCTTAATGATTCCAACACGTCCTC
TGTTTCTCCCTCCAGTCACCATCACAACATTTCCAACATCAAACTTGATG
AACTCGGTGATCTTGTTAGTCTCCAGGTCCAGCTTGATGGTATCATTGGC
CTTGATGAGTGGGTCTGGGTAGCGAATAGTCCTCCCATCATAAGTGTTGA
TGTAAGGGATTCCCTTCTGCCCAAATTGCACTGATCGAACCTTGCAGAGC
TTGAACTTAGCCTCCTCATCCCTGATTGAATGAAGGCGGAACCGGCCCTT
GGTGTCGTAAAGGAGACGGAAGTTC
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