CN189041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14 Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = -2 Query: 293 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 721 FR+L F+LH I +EE K ++ + + G +N +DGR I R DP + + DT+ + + +I IKF G + ++ GGRN GRVG++K+ +K G T + ++DA G+ F T L VF IG +P +SLP+G Sbjct: 100 FRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13 Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = -2 Query: 293 FRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGTKPWVSLPKG 691 F LH I EEA+FKL ++ + G ++ +DGR IR DP K T+K+ + ++ + +VG++V++ GGRN GRVG I + + + I+DA G + T L VF I +PW+SLP+G Sbjct: 110 FTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13 Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = -2 Query: 293 LHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 685 L I EEA FKLC++ + + G +N +DGR IR DP DT +KL + +I +++ G + +V+GGRN GRVG I + K + +I ++D G++F T L +F IG KP + LP+G Sbjct: 112 LIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV-EKPLIKLPEG 250
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12 Identity = 49/143 (34.27%), Postives = 77/143 (53.85%), Query Frame = -2 Query: 293 LHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 685 L I EEAK+KL ++ + + G +N +DGR I+ DP + K T+++ + +I +I D G +V+++GGRN GRVG I K +H+ + I+D G++F T L VF IGK +P + LP+G Sbjct: 112 LIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250 The following BLAST results are available for this feature:
BLAST of CN189041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189041 ID=CN189041; Name=CN189041; organism=Citrus sinensis; type=EST; length=725bpback to top |