CN189039

Overview
NameCN189039
Unique NameCN189039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHESR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 72/194 (37.11%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDGWG  +    N I+ A+TP +D  + +A     L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A+A  +  Q+    + +  + + G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G   +IAS  GR Y  MDR
Sbjct:    8 IALLILDGWGYRENTHMNAIYHANTPVLD--RLNAQYAHGLISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAIADHEFEQNPALCDAVDAAVKAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHESA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain ANA-3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 72/194 (37.11%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDGWG  +    N I+ A+TP +D  + +A     L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A+A  +  Q+    + +  + + G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G   +IAS  GR Y  MDR
Sbjct:    8 IALLILDGWGYRENTHMNAIYHANTPVLD--RLNAQYAHGLISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAIADHEFEQNPALCDAVDAAVKAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHEHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 72/202 (35.64%), Postives = 107/202 (52.97%), Query Frame = 1
Query:  106 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET----GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            ++R   +A+++LDGWG  +  + N +  A+TP +D      P    L+   G  VGLP +  MGNSEVGH  +G+GRI  Q    +  A+  G+   D     IK   +       +H++GLLS GGVHS  D ++ + + + +RGAK++ LH   DGRD    S+   +   E +L +  G G   Q+AS  GR Y  MDR
Sbjct:    2 MTRKRPLALLILDGWGYRENTQKNAVFHANTPVLDQLTAKYPNS--LISGSGIDVGLP-DGQMGNSEVGHINIGSGRIVYQELTRISKAIDDGEF--DTNPTLIKAIDDAIKADAAVHIMGLLSPGGVHSHQDHIEAMCRLSVKRGAKKVYLHAFLDGRDTPPRSAKPGLAHFE-ELFKTLGTG---QVASLIGR-YYAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHEFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 70/200 (35.00%), Postives = 104/200 (52.00%), Query Frame = 1
Query:  106 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +++   +A+++LDGWG  +  + N +  A+TP +D      P    L+   G  VGLP +  MGNSEVGH  +G+GRI  Q    +  A+A  +  Q+        K     G +H++GLLS GGVHS  + ++ + + A ERGA ++ LH   DGRD    S+   +   ++  A L G G  A I    GR Y  MDR
Sbjct:    1 MAKKRPLALLILDGWGYSEDTQDNAVFHANTPVLDKLNAQYPHS--LISGSGIDVGLP-DGQMGNSEVGHINIGSGRIVYQELTRISKAIADHEFEQNAALCDAVDKAIAANGAVHIMGLLSAGGVHSHEEHIEAMCRMAVERGATKVYLHAFLDGRDTPPRSAKNSLVHFDELFASL-GHGRTASII---GR-YFAMDR 192          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SYMTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Symbiobacterium thermophilum GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 73/194 (37.63%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            VA++VLDGWG     + N + +A  P  D      P     L A G AVGL     MG+S VGH  LGAGRI  Q    +  ++  G  Y    +  +  +       LHL+GL+SDGGVHS +D L  L+  A     +R+ +H   DGRDV   S++ ++E +E   A+L+  G+ A IA+  GR Y  MDR
Sbjct:    8 VALIVLDGWGLNPDPRANAVAMARHPNFDRLMARYPHT--TLTASGEAVGL-LPGQMGDSNVGHLNLGAGRIVYQTLVRIWRSIQDGSFYTLPVWRPVLDRAKQPGKALHLMGLVSDGGVHSHIDHLLALIDLAKRENVERVYVHAFLDGRDVPPQSALPYLERVE---AKLKETGIGA-IATISGR-YYAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 72/194 (37.11%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDGWG  +    N I+ A+TP +D  + +A     L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A+A  +  Q+    + +  + + G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G   +IAS  GR Y  MDR
Sbjct:    8 IALLILDGWGYRENTHMNAIYHANTPVLD--RLNAQYAHGLISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAIADHEFEQNPALCDAVDVAVKAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHEDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 73/197 (37.06%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDGWG  +    N I  A TP +D      P    L+   G  VGLP +  MGNSEVGH  +G+GR+  Q    V  A+  G+  ++        + IK +   G +H++GLLS GGVHS  + ++ + + A +RGAK++ LH   DGRD    S+ G +     DL    G+G   +IAS  GR Y  MDR
Sbjct:    8 LALLILDGWGYRENPHNNAIFHARTPVLDKLNAQFPNS--LISGSGLDVGLP-DGQMGNSEVGHINIGSGRVVYQELTRVSKAIEEGEFEENTVLCKTIDDAIKAN---GAVHIMGLLSPGGVHSHEEHIEAMCRMAVKRGAKQVYLHAFLDGRDTPPRSAKGSLAHF-GDLFTTLGQG---RIASVIGR-YYAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_DESVH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 69/192 (35.94%), Postives = 100/192 (52.08%), Query Frame = 1
Query:  130 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +++LDGWG+      N + +A  P + S  + A      L   G AVGLP E  MGNSEVGH  +GAGR+  Q    +D+A+  G++  +     +  +     G +HL+GLLSDGGVHS +  ++ L   A + G + + +H   DGRD    S VG+V+ +   L   R      +I S  GR Y  MDR
Sbjct:    8 LLILDGWGKAPAGPGNAVTLAGMPHLSSLLRQAG--CTELACSGRAVGLP-EGFMGNSEVGHMNIGAGRVVYQDMTRIDIAVERGELASNPALTGLFEAVRATGGRVHLMGLLSDGGVHSHIAHVEALALAARDAGVE-VVVHAFLDGRDTAPTSGVGYVKRLASFLESNRA----GRIGSLVGR-YYAMDR 190          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHEON (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella oneidensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21
Identity = 71/194 (36.60%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDGWG  +    N ++ A+TP +D  + +A     L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A+A  +  Q+    + +  + +TG  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   +IAS  GR Y  MDR
Sbjct:    8 IALLILDGWGYRENTHMNAVYHANTPVLD--RLNAQYAHGLISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAIADHEFEQNPALCDAVDAAVKTGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKSSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_NOSP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21
Identity = 73/194 (37.63%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V +V+LDGWG  +  + N I  A TP +DS   + P    L+R  G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I     +    LHL+GL S+GGVHS +  L  LL  A  +    + +H +TDGRD      V  + T+ ++  +  G G   +I +  GR Y  MDR
Sbjct:    9 VVLVILDGWGYCEEKRGNAIVAAKTPIVDSLWAAYPHT--LIRTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSIALNPALVKICQEVRSRNSKLHLVGLCSEGGVHSHITHLFGLLDLAKNQQIPEVCIHAITDGRDTAPTDGVRAI-TMLQNYIDRTGIG---RIVTLSGR-YYAMDR 194          
The following BLAST results are available for this feature:
BLAST of CN189039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_SHESR3.094e-2137.112,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESA3.094e-2137.112,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEHH3.094e-2135.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEFN3.094e-2135.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYMTH4.041e-2137.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESM4.041e-2137.112,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEDO4.041e-2137.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DESVH4.041e-2135.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEON5.278e-2136.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NOSP75.278e-2137.632,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001D14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189039 ID=CN189039; Name=CN189039; organism=Citrus sinensis; type=EST; length=699bp
CCGCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCCCCTTCAATC
CAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAAAAGAGCATC
CACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTGGATGGCTGG
GGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGCCGACACTCC
CACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGAGGTTGCTCC
GAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACATGGGTAAC
AGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTGCTCAAGG
TGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTATCAAGATG
AGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACATTGCACCTT
ATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTTCA
GTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCTTC
ATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGATTC
GTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAGGTGTTGA
CGCGCAGATTGCATCTGGAGGAGGCCGCCTGTACGTCACGATGGACCGT
back to top