CN189039

Overview
NameCN189039
Unique NameCN189039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_AGRT5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 71/194 (36.60%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V + +LDGWG  +    N   +A+TPTMD    + P     L   G  VGLPT   MGNSEVGH  +GAGRI A     +DLA+  G  +++        + +   G  HL+ ++SDGGVH  +   Q  +K     G K + +H +TDGRDV   S+  FV  +   L +       A I +  GR Y  MDR
Sbjct:    7 VVLTILDGWGLNEDTSSNAPVLANTPTMDRLFATCPNA--TLTTFGPNVGLPT-GQMGNSEVGHTNIGAGRIVAMDLGQIDLAIEDGSFFRNAAMLDFAATVKAAGGVAHLMCVVSDGGVHGHILHGQAAVKLMVSHGLK-VVVHAITDGRDVAPQSAEDFVAALVASLPQ------GASIGTVIGR-YYAMDR 189          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_ONYPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Onion yellows phytoplasma GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 71/197 (36.04%), Postives = 99/197 (50.25%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERG-AKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V + +LDG G     + N  H+A TP +D   K+ P     L+A G  VGLP +  MGNSEVGH  LGAGR+  Q    ++ A+     + ++ F     ++K +     +HL+GL+SDGG+HS LD  + L     E   A    LH  TDGRD    S + ++    KDL +         IAS  GR Y  +DR
Sbjct:    6 VGLTILDGLGLTDQKENNAFHLAKTPYLDYLLKNFPNT--TLKASGEEVGLP-QGQMGNSEVGHLNLGAGRVVYQSLTQINKAIRDKSFFTNKQFLQAIEHVKKN--NSKMHLLGLISDGGIHSHLDHFKALFDLLKENNLANNTFLHAFTDGRDTSPHSGINYI----KDLLD-----YGFNIASVVGR-YYALDR 187          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_HERA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 67/194 (34.54%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V + ++DGWG       N + +A+TP ++ +  + P     L A G  VGLP E  +GNSEVGH  +GAG +  Q +  +  ++ SG+ +++  F   ++   E GT +HLIGL+  GGVH+    L  LL+  +++G     +H   DGRD L  S +G++  +++ ++++   GV  Q+AS  GR Y  MDR
Sbjct:    7 VLLAIMDGWGLAPAGPGNGVSLANTPNVNHWMATCPTTQ--LHASGLDVGLP-EGQIGNSEVGHLNIGAGLVVYQDSTRISESIKSGEFFENPAFLEAVQIVKERGTNMHLIGLIGRGGVHAYDIHLAGLLQLMAQQGVNHTYIHAFMDGRDTLPQSGLGYMRELQQTISQI---GV-GQVASVIGR-YYAMDR 192          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_YERE8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 74/194 (38.14%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            + + +LDG+G  +  + N I  A TP MD   +  P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D  +  G  + +      +  + + G  +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD    S+   ++   +  A L GKG   +IAS  GR Y  MDR
Sbjct:    8 LVLTILDGYGHREEQQDNAILNAKTPVMDRLWQQQPHT--LIAASGLDVGLP-DGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKDGDFFTNPTLTAAVDKAVKAGKAVHIMGLLSAGGVHSHEDHILAMVELAAKRGATAIYLHAFLDGRDTPPRSAEPSLKRFTEKFAAL-GKG---RIASIIGR-YYAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_THIDA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 74/194 (38.14%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V +++LDG+G       N I  A+ P  D   K  P    L+ A  S VGLP +  MGNSEVGH  +GAGR+  Q    +D A+ SG  Y +    N +  + + G TLH++GLLSDGGVHS       LL  A+  G  ++ LH+  DGRD    S+  ++  +   +A+    GV   +AS  GR Y  MDR
Sbjct:    6 VLLIILDGFGCRDERANNAIAQANKPNWDRLWKHHPHT--LIHASESEVGLP-KGQMGNSEVGHLNIGAGRVVYQEFTRIDRAIESGYFYTNPALLNAVHLARDNGKTLHVLGLLSDGGVHSHELHFHALLDLAAREGLSKVCLHVFLDGRDTPPKSAELYLRRLTDKIAQ---AGV-GHVASMIGR-YFAMDR 191          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_RHOBA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopirellula baltica GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 74/206 (35.92%), Postives = 103/206 (50.00%), Query Frame = 1
Query:  109 SRNNIVAVVVLDGWGEFKPDKYN---CIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERG--AKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +R   V ++V DGWG+    K+N    +H+A+TP  D   +  P    L+   G  VGLP    MGNSEVGH  +GAGRI  Q    +  A+     + +       +++K S   G LHL+GL+SDG VHS L     ++  A   G    ++ +H +TDGRD      + FV  +  D  E  G GV   +AS  GR Y  MDR
Sbjct:    9 TRRRPVVLIVRDGWGQNPDPKWNESNAVHLANTPVDDKLTQEYPSV--LIHTSGEDVGLPA-GVMGNSEVGHQNIGAGRIVDQEVMRITRAIRDDSFFSNPVVTGAIDHVKKS--GGRLHLLGLMSDGRVHSDLQHGIAVIDLAKRNGLTGDQLAIHAITDGRDTSPRGGLKFVSQL-TDHCEASGVGV---VASVIGRFY-AMDR 204          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_PSYIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychromonas ingrahamii (strain 37) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 68/194 (35.05%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            + ++++DGWG       N +  A+TP +D   K       LL A G  VGLP +  MGNSEVGH  +GAGR   Q    V  +++ G  + ++ F + +  +   G  +H++GL S GGVHS    +   ++ A++RGAK I +H   DGRD    S+ G +   ++  A+L G G  A +    GR Y  MDR
Sbjct:    8 LVLLIMDGWGYRPNMPDNAVANANTPVLDKLCKDYANN--LLSASGMDVGLP-DGQMGNSEVGHTNIGAGRTVYQNLTKVTKSISDGDFFDNKNFVDAVDQAVAAGKAVHIMGLASPGGVHSHDQHIVAAIELAAQRGAKNILVHAFLDGRDTPPRSAAGTLALFDEKYAQL-GVGRTATLV---GR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_BACFR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 73/194 (37.63%), Postives = 99/194 (51.03%), Query Frame = 1
Query:  130 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +++LDGWG     K + I    TP  D   ++ P     L+A G  VGLP +  MGNSEVGH  +GAGR+  Q    ++L+     I ++      F+Y K + +   +H +GL SDGGVHS LD L  L   A E   +   +H   DGRD    S  GF+E +E   A+  GK     +AS  GR Y  MDR
Sbjct:    7 LMILDGWGLGDHGKDDVIFNTATPYWDYLMETYPHSQ--LQASGENVGLP-DGQMGNSEVGHLNIGAGRVVYQDLVKINLSCRDNSILKNPEIVSAFSYAKENGKN--VHFMGLTSDGGVHSSLDHLFKLCDIAKEYNIENTFVHCFMDGRDTDPKSGKGFIEQLEAHCAKSAGK-----VASIIGR-YYAMDR 189          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_BACFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 73/194 (37.63%), Postives = 99/194 (51.03%), Query Frame = 1
Query:  130 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +++LDGWG     K + I    TP  D   ++ P     L+A G  VGLP +  MGNSEVGH  +GAGR+  Q    ++L+     I ++      F+Y K + +   +H +GL SDGGVHS LD L  L   A E   +   +H   DGRD    S  GF+E +E   A+  GK     +AS  GR Y  MDR
Sbjct:    7 LMILDGWGLGDHGKDDVIFNTATPYWDYLMETYPHSQ--LQASGENVGLP-DGQMGNSEVGHLNIGAGRVVYQDLVKINLSCRDNSILKNPEIVSAFSYAKENGKN--VHFMGLTSDGGVHSSLDHLFKLCDIAKEYNIENTFVHCFMDGRDTDPKSGKGFIEQLEAHCAKSAGK-----VASIIGR-YYAMDR 189          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_AYWBP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 60/168 (35.71%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERG-AKRIRLHILTDGRDVLDGSSVGFVETI 612
            V +++LDG G     + N  H+A TP +D   K+ P     L+A G  VGLP +  MGNSEVGH  LGAGR+  Q    ++ A+     + ++ F     ++K +     +HL+GL+SDGG+HS LD  + L     E   A    LH  TDGRD    S + +++ +
Sbjct:    6 VGLIILDGLGLTDQKENNAFHLAKTPYLDYLLKNFPNT--TLKASGEEVGLP-QGQMGNSEVGHLNLGAGRVVYQSLTQINKAIRDKTFFTNKQFLQAIEHVKKN--NSKIHLLGLISDGGIHSHLDHFKALFDLLKENNLANNTFLHAFTDGRDTGTHSGINYIKNL 168          
The following BLAST results are available for this feature:
BLAST of CN189039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_AGRT59.003e-2136.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ONYPE1.176e-2036.042,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HERA21.176e-2034.542,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERE81.536e-2038.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THIDA1.536e-2038.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOBA1.536e-2035.922,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYIN1.536e-2035.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFR1.536e-2037.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFN1.536e-2037.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AYWBP2.006e-2035.712,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189039 ID=CN189039; Name=CN189039; organism=Citrus sinensis; type=EST; length=699bp
CCGCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCCCCTTCAATC
CAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAAAAGAGCATC
CACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTGGATGGCTGG
GGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGCCGACACTCC
CACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGAGGTTGCTCC
GAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACATGGGTAAC
AGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTGCTCAAGG
TGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTATCAAGATG
AGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACATTGCACCTT
ATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTTCA
GTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCTTC
ATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGATTC
GTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAGGTGTTGA
CGCGCAGATTGCATCTGGAGGAGGCCGCCTGTACGTCACGATGGACCGT
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