CN189039

Overview
NameCN189039
Unique NameCN189039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS185) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 70/194 (36.08%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDGWG  +    N I  A+TP +D      P    L+   G  VGLP +  MGNSEVGH  LG+GR+  Q    +  A+A  +  Q+    + +  + + G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   +IAS  GR Y  MDR
Sbjct:    8 LALLILDGWGYRENTHNNAIFHANTPVLDRLNAQYPHS--LISGSGLDVGLP-DGQMGNSEVGHINLGSGRVVYQELTRISKAIADHEFEQNPALCDAVDSAIKAGGAVHIMGLLSAGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKTSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_BACV8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 73/194 (37.63%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  130 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +++LDGWG     K + I    TP  DS   + P     L+A G  VGLP +  MGNSEVGH  +GAGRI  Q    ++ A A   I ++      F+Y K + +   +H +GL S+GGVHS  D L  L   + E G +   +H   DGRD    S  GF+E +     +  GK     IAS  GR Y  MDR
Sbjct:    7 LMILDGWGIGDQGKDDVIFNTPTPYWDSLLANYPHSE--LQASGENVGLP-DGQMGNSEVGHLNIGAGRIVYQDLVKINRACADNSIMKNPEIVSAFSYAKENGKN--IHFMGLTSNGGVHSSFDHLFKLCDISKEYGIENTFIHCFMDGRDTDPKSGKGFIEQLTAHCEKSAGK-----IASIVGRFY-AMDR 189          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 67/192 (34.90%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  130 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRG--KGVDAQIASGGGRLYVTMDR 699
            +++ DG G  K  K+N    A  P+ +   K  P    LL+  G AVGLP E  MGNSEVGH  +G+GRI  Q    ++ A+ + ++ ++E  N  K   +   +H+IGL SDGGVHS     + +L+  ++ G   +  H +TDGRDV   S + F++       +L+G  + +    A+  GR Y +MDR
Sbjct:    7 LIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNS--LLKTSGLAVGLP-EGQMGNSEVGHMCIGSGRIIYQNLVRINKAIKNKELEKNE--NLQKLLAKCKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNG-NEVFAHAITDGRDVSPKSGLNFIK-------DLKGFCENLGVHFATLCGRFY-SMDR 184          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pneumoniae GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 70/194 (36.08%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V + +LDG+G       N ++ A TP +DS  K  P    +L A G AVGLP +  +GNSEVGH  +GAGRI   G  L++  + +G  + ++       +       LHLIGL S GGVHS +D L  L+K A+ +   ++ LH+  DGRDV   +    +E     L +      +  I + GGR Y  MDR
Sbjct:    5 VLLAILDGYGISNKQHGNAVYHAKTPALDSLIKDYP--CVMLEASGEAVGLP-QGQIGNSEVGHLNIGAGRIVYTGLSLINQNIKTGAFHHNQVLLEAIARAKANNAKLHLIGLFSHGGVHSHMDHLYALIKLAAPQ--VKMVLHLFGDGRDVAPCTMKSDLEAFMVFLKDYH----NVIIGTLGGR-YYGMDR 188          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni (strain RM1221) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 67/192 (34.90%), Postives = 102/192 (53.12%), Query Frame = 1
Query:  130 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRG--KGVDAQIASGGGRLYVTMDR 699
            +++ DG G  K  K+N    A  P+ +   K  P    LL+  G AVGLP E  MGNSEVGH  +G+GRI  Q    ++ A+ + ++ ++E  N  K   +   +H+IGL SDGGVHS     + +L+  ++ G   +  H +TDGRDV   S + F++       +L+G  + +    A+  GR Y  MDR
Sbjct:    7 LIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNS--LLKTSGLAVGLP-EGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNE--NLQKLLAKCKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNG-NEVFAHAITDGRDVSPKSGLNFIK-------DLKGFCENLGVHFATLCGRFY-AMDR 184          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_MESFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesoplasma florum GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 72/198 (36.36%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSA--VGLPTEDDMGNSEVGHNALGAGRIFAQG-AKLVDLALASGKIYQD---EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V + +LDGWG  +    N +  AD      F K   G +  ++AH S   VGLP E  MGNSEVGH  LGAGRI  +  AKL       G +  +   + F Y+K       LHL+GL SDGGVHS ++ +  + K A + G   I+  ++TDGRD     +  ++  +   L  ++      +IAS  GR Y  MDR
Sbjct:    7 VILAILDGWGIEEAGVGNAVANAD----QKFVKEMMGMYPWVKAHASGEWVGLP-EGQMGNSEVGHIHLGAGRINMESLAKLNHEVKVDGFLTNEVLVDTFKYVKE--HNSALHLMGLFSDGGVHSHMNHMISMYKAAVKFGLTNIKFDLITDGRDTAPKVAEQYINQL---LQVIKDNNNIGEIASISGR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHESW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain W3-18-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 68/194 (35.05%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDGWG  +    N I  A TP +D      P    L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A++  +   +    + +  +   G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   ++AS  GR Y  MDR
Sbjct:    8 IALLILDGWGYRENTHMNAIFHAKTPVLDRLNAQYPHG--LISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAISDHEFETNPALCDAVDSAINAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKASLSHFD-DLFTTLGHG---RVASIIGR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 68/194 (35.05%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDGWG  +    N I  A TP +D      P    L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A++  +   +    + +  +   G  +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   ++AS  GR Y  MDR
Sbjct:    8 IALLILDGWGYRENTHMNAIFHAKTPVLDRLNAQYPHG--LISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAISDHEFETNPALCDAVDSAINAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKASLSHFD-DLFTTLGHG---RVASIIGR-YFAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_WOLPM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolbachia pipientis wMel GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 67/195 (34.36%), Postives = 97/195 (49.74%), Query Frame = 1
Query:  124 VAVVVLDGWGE-FKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLV--DLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V + +LDGWG   + +KYN I  A+ P       + P     L A G+ VGLP    +GNSEVGH  +G+GR+  Q  + +  ++      +      N +K   + G  H++GL+SDGGVHS    +  L    S+ G K + +H   DGRD L  S    ++   K +     KG D +IA+  GR Y  MDR
Sbjct:    6 VVLCILDGWGNGIENNKYNAISNANPPCWQYISSNYPKC--SLSACGADVGLPG-GQIGNSEVGHMNIGSGRVVIQSLQRINQEIGTIENNVNLQSFINDLKS--KNGVCHIMGLVSDGGVHSHQKHISTLANKISQHGIK-VVIHAFLDGRDTLPNSGKKCIQEFTKSI-----KGNDTRIATVSGR-YYAMDR 188          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_CHRVO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromobacterium violaceum GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 62/192 (32.29%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V +++LDG+G       N I  A  P     ++     +  + A  + VGLP+    GNSEVGH  +GAGRI  Q    +D  +  G+   ++         +   LH++GLLSDGGVHS  + +  L++ A   G  +I +H   DGRD    S+  +++ ++  LAE      +A++ S  GR Y  MDR
Sbjct:    7 VLLLILDGFGHRTEGDDNAILHARMPVWSRLREQYA--YGTINASENFVGLPS-GQFGNSEVGHLNIGAGRIVQQDISRIDCDIEDGRFSSNDTLQQAMSKAQGSALHILGLLSDGGVHSHENHIHALIRAAQAAGVPKIYVHAFLDGRDTPPRSAETYLKRLDAALAEC----PNARLVSVTGR-YWAMDR 190          
The following BLAST results are available for this feature:
BLAST of CN189039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_SHEB85.836e-2036.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACV85.836e-2037.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJD7.622e-2034.902,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPN9.954e-2036.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJR9.954e-2034.902,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MESFL2.896e-1936.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESW3.783e-1935.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPC3.783e-1935.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLPM4.940e-1934.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHRVO6.452e-1932.292,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189039 ID=CN189039; Name=CN189039; organism=Citrus sinensis; type=EST; length=699bp
CCGCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCCCCTTCAATC
CAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAAAAGAGCATC
CACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTGGATGGCTGG
GGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGCCGACACTCC
CACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGAGGTTGCTCC
GAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACATGGGTAAC
AGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTGCTCAAGG
TGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTATCAAGATG
AGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACATTGCACCTT
ATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTTCA
GTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCTTC
ATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGATTC
GTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAGGTGTTGA
CGCGCAGATTGCATCTGGAGGAGGCCGCCTGTACGTCACGATGGACCGT
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