CN189039

Overview
NameCN189039
Unique NameCN189039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_EHRCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ehrlichia chaffeensis (strain Arkansas) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 68/200 (34.00%), Postives = 97/200 (48.50%), Query Frame = 1
Query:  115 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI-----KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            N+ V + +LDGWG  +  ++N I  +  P  D+     P     L  HG  VGLP +  +GNSEVGH  LG+GRI  Q     DL   + +I   +   Y+     K     G  H+ GLLSDGGVHS L    L +         +I +HI  DGRD    S++ ++  + + +  L     +  IA+  GR Y +MDR
Sbjct:    3 NHSVILCILDGWGNSENSQFNAIAQSYKPCWDNTILQYPKSQ--LITHGLNVGLP-DGQIGNSEVGHVNLGSGRIVLQ-----DLCKINNEIKYIKNNRYLLEFIKKIKQNNGICHIAGLLSDGGVHS-LHTHMLDIIDTLSNFQIQIAVHIFLDGRDTPPISAIKYINILREHIKHLN----NVNIATISGR-YYSMDR 188          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_UREPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 55/195 (28.21%), Postives = 98/195 (50.26%), Query Frame = 1
Query:  115 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            N  + ++++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGR   D    GF + IE+  A  +   +  +  SG    Y  MDR
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFP--TLQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGR---DDYPYGFAQFIEQINALKKQYNIIVKSLSG---RYFAMDR 183          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_UREP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 55/195 (28.21%), Postives = 98/195 (50.26%), Query Frame = 1
Query:  115 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            N  + ++++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGR   D    GF + IE+  A  +   +  +  SG    Y  MDR
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFP--TLQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGR---DDYPYGFAQFIEQINALKKQYNIIVKSLSG---RYFAMDR 183          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_UREU1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  106 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 612
            +S N  +A++++DG G  K D  N +++A+  T++   K+ P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +    + +  + +        +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD        F+E I
Sbjct:    1 MSLNKKLALIIIDGLGIGKKDDTNAVYLANPKTLNYLIKNYPTLE--ISAAQQPIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINSYTKRLDYESLVLNDINNEIVHVVGMYSNGLVHSNYEHIHWIIKELVKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_TOBBP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Tomato big bud phytoplasma GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  259 GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLD 492
            G AVGLP +  MGNSEVGH  LGAGR+  Q    ++  +  G  ++++ F  +    +T    LHL+GL+SDGGVHS LD
Sbjct:    1 GEAVGLPAQQ-MGNSEVGHLNLGAGRVVHQSLTYINRKIKDGSFFKNKCFLKVIQHVKTNKSKLHLLGLVSDGGVHSHLD 79          
The following BLAST results are available for this feature:
BLAST of CN189039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_EHRCR3.914e-1634.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREPA5.290e-1328.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREP25.290e-1328.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREU11.303e-1128.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_TOBBP4.952e-1146.252,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189039 ID=CN189039; Name=CN189039; organism=Citrus sinensis; type=EST; length=699bp
CCGCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCCCCTTCAATC
CAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAAAAGAGCATC
CACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTGGATGGCTGG
GGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGCCGACACTCC
CACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGAGGTTGCTCC
GAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACATGGGTAAC
AGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTGCTCAAGG
TGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTATCAAGATG
AGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACATTGCACCTT
ATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTTCA
GTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCTTC
ATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGATTC
GTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAGGTGTTGA
CGCGCAGATTGCATCTGGAGGAGGCCGCCTGTACGTCACGATGGACCGT
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