CN189039

Overview
NameCN189039
Unique NameCN189039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPG (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain GB-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 75/194 (38.66%), Postives = 110/194 (56.70%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            + +++LDG+G  +  ++N I  A+TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++        K +     +H++GLLSDGGVHS  D L  + + A++RGA++I LH   DGRD    S+   +E ++   A+L GKG   +IAS  GR Y  MDR
Sbjct:    8 LVLIILDGFGHSEVPEHNAIFAANTPVYDRLRATLPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFKNPVLTGAVDKAASAGKAVHILGLLSDGGVHSHQDHLVAMAELAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELLDATFAKL-GKG---RIASLIGR-YYAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Lens) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 75/200 (37.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query:  106 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    LL+A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA    K   A I S  GR Y  MDR
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELA----KHPVATINSICGR-YYAMDR 192          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 75/200 (37.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query:  106 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    LL+A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA    K   A I S  GR Y  MDR
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELA----KHPVATINSICGR-YYAMDR 192          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Paris) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 75/200 (37.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query:  106 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    LL+A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA    K   A I S  GR Y  MDR
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELA----KHPVATINSICGR-YYAMDR 192          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 78/194 (40.21%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            VA++++DGWG  +    N I  A TP +D   K       L+ A G  VGLP    MGNSEVGH  LGAGR+  Q    V  A+  G  +++E    N  K   +   +H++GLLS GGVHS  D +  ++K A++RGAK+I LH   DGRD    S+   +E  +K   EL G G  A +    GR Y  MDR
Sbjct:    8 VALIIMDGWGHREDTTNNAIAHAKTPVLDRLTKETTNT--LISASGMDVGLPG-GQMGNSEVGHVNLGAGRVVYQDFTRVTKAIEDGDFFENEVLVSNVDKAIKQDKAVHIMGLLSPGGVHSHQDHIFAMIKLAAKRGAKKIFLHAFLDGRDTPPRSAKAPLEAADKVFEEL-GVGKTATLV---GR-YYAMDR 193          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 78/197 (39.59%), Postives = 115/197 (58.38%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            VA+++LDG+        N +  A+ P  D +    P     L+A G AVGLP E  MGNSEVGH  +GAGRI  Q    +++A+  G+  ++E F    N++K   + GT LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   ++  +++ +++ + E    GV  +IA+  GR Y +MDR
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--TLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY---GV-GEIATLSGR-YYSMDR 191          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI1_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 71/192 (36.98%), Postives = 105/192 (54.69%), Query Frame = 1
Query:  130 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +++LDGWG  +  + N I  A TP +D   +  P  W  L A G AVGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  +++  F            +LHL+GL+S GGVHS +  +  L+K A + G K++ +H   DGRDV   +++  +E ++    E      +A+IA+  GR Y  MDR
Sbjct:   13 LIILDGWGYREAREGNAILAARTPNLDHLIEEYP--WCFLEASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQDLTRINFSIRKGDFFKNPAFLGAISNAKANDSSLHLMGLVSYGGVHSYMAHIHALIKLAQQEGVKKVYIHAFLDGRDVPPKAALKDIEELDAFCKE----NGNAKIATISGR-YYAMDR 196          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 79/194 (40.72%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGVH+ LD L  LLK A+ +G + + +H +TDGRD      V  +  IE+ +A     GV  QI +  GR Y  MDR
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPST--LIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLDHLGGLLKLAAAQGIQDVYIHAITDGRDTNPTEGVNCITKIERLIAT---AGV-GQIVTICGR-YFAMDR 194          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SYNE7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus elongatus (strain PCC 7942) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 79/194 (40.72%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGVH+ LD L  LLK A+ +G + + +H +TDGRD      V  +  IE+ +A     GV  QI +  GR Y  MDR
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPST--LIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLDHLGGLLKLAAAQGIQDVYIHAITDGRDTNPTEGVNCITKIERLIAT---AGV-GQIVTICGR-YFAMDR 194          
BLAST of CN189039 vs. ExPASy Swiss-Prot
Match: GPMI_SACD2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 73/194 (37.63%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  124 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRLYVTMDR 699
            +A+++LDG+G  + DKYN I+ A  PT        P     +   G AVGLP E  MGNSEVGH  LGAGR+  Q    ++ A+A G  Y +  +       ++    +H+IGLLSDGGVHS  D +  +++ A +RGA+++ +H   DGRD    S+   ++  E+ L  L G     +IAS  GR +  +DR
Sbjct:    8 LALIILDGFGYSESDKYNAINAAKAPTWRKIWAENPKT--TIATSGMAVGLP-EGQMGNSEVGHMTLGAGRVVYQNFTRINKAIADGDFYTNPVYTKAVDDAQSQGKAVHVIGLLSDGGVHSHEDHMIAMMELAVKRGAEKVYMHAFLDGRDTPPRSAKAPLQKTEEKLKALGG----GKIASIIGRFF-ALDR 193          
The following BLAST results are available for this feature:
BLAST of CN189039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_PSEPG6.025e-2538.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPL6.025e-2537.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPH6.025e-2537.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPA6.025e-2537.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA67.869e-2540.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACST7.869e-2539.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METBF7.869e-2536.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP61.028e-2440.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNE71.028e-2440.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SACD21.028e-2437.632,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189039 ID=CN189039; Name=CN189039; organism=Citrus sinensis; type=EST; length=699bp
CCGCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCCCCTTCAATC
CAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAAAAGAGCATC
CACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTGGATGGCTGG
GGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGCCGACACTCC
CACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGAGGTTGCTCC
GAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACATGGGTAAC
AGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTGCTCAAGG
TGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTATCAAGATG
AGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACATTGCACCTT
ATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTTCA
GTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCTTC
ATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGATTC
GTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAGGTGTTGA
CGCGCAGATTGCATCTGGAGGAGGCCGCCTGTACGTCACGATGGACCGT
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