CN189038

Overview
NameCN189038
Unique NameCN189038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:1233..1970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  360 INSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6 GN=gpmI PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  360 INSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  360 INSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_ECOK1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O1:K1 / APEC GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  360 INSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_ECOHS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O9:H4 (strain HS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  360 INSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_ECO57 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O157:H7 GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  360 INSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_ECO24 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  360 INSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 60/161 (37.27%), Postives = 90/161 (55.90%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            IPS    T++++P+M A EI +   + I S ++  + +N  N DMVGHTG  EA V A +A D+ +  I++ +++ GG+ L+TADHGNAE+M+   K+GEP          T+HT  PV     G     ++K    L NG L +VA T + L G   P +
Sbjct:  371 IPSPKIATYDLKPEMSAYEITDEVIRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDKCIGRIVEVLKEKGGVALITADHGNAEEMIDL-KTGEP---------HTAHTSNPVKCIYFG---NSEIK---ALRNGKLCDVAPTILELLGIPKPQE 515          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_THERP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 61/163 (37.42%), Postives = 86/163 (52.76%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD--DVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            +PS    T++++P+M A E+ + A +AI+S+R+  V VN  N DMVGHTG   A V A +  D  +  I  A+  V G  +VTADHGNA++M          L  G  +V T+HT  PVP  +  P       V  RT    G LA+VA T + + G   P +
Sbjct:  361 VPSPKVPTYDLKPEMSAPEVTDAAVQAIVSQRYAFVLVNYANPDMVGHTGVFAAAVAAVECVDRCLGRIEQAVRSVNGYLVVTADHGNADEM----------LVPGTNEVWTAHTKNPVPFILVAPNHSPFRSVALRT---GGRLADVAPTILEIMGLPQPEE 510          
BLAST of CN189038 vs. ExPASy Swiss-Prot
Match: GPMI_PSEHT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = -3
Query:  248 IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 730
            IPS    T+++QP+M +  + ++   AI S ++  +  N PN DMVGH+G   A V AC+A D  +  ++ A+ K GG  L+TADHGNAE M          LK G  Q  T+HT +PVP    G       +  T      L++VA T ++L G E P++
Sbjct:  361 IPSPQVATYDLQPEMNSEMLTDKLVAAIKSGKYDAIICNYPNGDMVGHSGVFAAAVKACEAVDHCIGRVVAALNKYGGEALITADHGNAEQMAN--------LKTG--QAHTAHTSEPVPFIYVG-------RDATASEGKALSDVAPTMLHLMGMEQPTE 504          
The following BLAST results are available for this feature:
BLAST of CN189038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
GPMI_ECOLC4.857e-2037.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL64.857e-2037.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL54.857e-2037.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOK14.857e-2037.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOHS4.857e-2037.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECO574.857e-2037.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECO244.857e-2037.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF4.857e-2037.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THERP6.344e-2037.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEHT6.344e-2036.652,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189038 ID=CN189038; Name=CN189038; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTTTTTTTTTAAATAAATTTTGAGCTATATTGTTCTGTCTGCCT
CCAACAGACAGCAATCGAAATGTAAGCTGAAAAACAGCACGCGTATCAAA
ATGAATTCAAGACCCCAAAATTCAATTTATTGTTTTACGTTTTAACGGAA
TTCCTCCGGAGTTATAAAATCTAGGCGACGATCCATTGTTCGCCCAGTCG
TCAGTTACTTCTCAGTCGTCAGTTACTTCAATAAGACTTGGCTCGTAGTC
ACTAGGCGCCTCATATCCATGGAGATTGATAAAAGTTGCTGCTACATTGG
CCAGCCCACCATTAGGGAGATCTGTGCGGAACTTGACATCATCTGGCAGT
CCAGGACCTCCGATTGCAATGGGAACGGGTTTAAGAGTGTGAGACGTGAG
CACTTGAATATTGCCATCCTTAAGAAGAGGCTCCCCAGATTTGTTCCTCT
TGACCATGTCCTCAGCATTGCCATGATCTGCAGTAACAAGATATATTCCA
CCAACTTTCTCTATTGCATCAATGATTATCTTGACAGCTTCATCAGCAGC
CTTGCATGCCACCACTGTTGCCTCAATATCTCCCGTGTGCCCCACCATGT
CACTATTTGGTAGGTTAACACGCACCTGGTGGAACCTGCGACTAAGGATG
GCCTTCTTTGCCCTTTCAGCAATCTCCAAAGCCTTCATCTTGGGCTGTAC
ATTGAAAGTAATTCCAGAATCACTAGGAATTTCCACAT
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