CN182412

Overview
NameCN182412
Unique NameCN182412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 53/161 (32.92%), Postives = 83/161 (51.55%), Query Frame = -2
Query:  215 RNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDD 697
            +NA   L +++LVEAKW    + P  EE+  N + + G  +  +  F  +G  +T ET +   S+P II ++  I R  DD+   K +++   D S I  YM+E+  + A+EA       +  AWK LN+E L P          SLNLAR++ ++Y   D
Sbjct:  372 KNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVT-AQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGD 531          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 54/182 (29.67%), Postives = 91/182 (50.00%), Query Frame = -2
Query:  167 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPA-IISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINK-ISDAWKRLNKECLCPNP--FSASFTRASLNLARMVPLMYSYDDNQRLPSLEHFIKSLLS 700
            L+ +WT + KA+LVEAKW+ SGH P  EEY++N   S       VH + +    ++ + +E +  +   ++  ++++ RL +DL ++ DE   G     I  YM E    A+E+  +S + + I+D W  +N E +  +       F    +NLARM   MY Y D    P     +  ++S
Sbjct:  403 LKKSWTDVSKAYLVEAKWYKSGHKPNLEEYMQNARISISSPTIFVHFYCVFSDQLSIQVLETLSQHQQNVVRCSSSVFRLANDLVTSPDELARGDVCKSIQCYMSE--TGASEDKARSHVRQMINDLWDEMNYEKMAHSSSILHHDFMETVINLARMSQCMYQYGDGHGSPEKAKIVDRVMS 582          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = -2
Query:  215 RNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDD 697
            + A   L +A+L+EAKW    + P  EE+  N + +SG  +  +  F  +G  IT ET +   S+P II ++  I R  DD+   K  ++   D S I  YMK++  + A+EA       I  +WK +N+E L P          SLNLAR++ ++Y   D
Sbjct:  373 KKAMIRLVQAYLLEAKWTHQNYKPTFEEFRDNALPTSGYAMLAITAFVGMGEVITPETFKWAASDPKIIKASTIICRFMDDIAEHKFNHRREDDCSAIECYMKQYGVT-AQEAYNEFNKHIESSWKDVNEEFLKPTEMPTPVLCRSLNLARVMDVLYREGD 532          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 51/161 (31.68%), Postives = 83/161 (51.55%), Query Frame = -2
Query:  215 RNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDD 697
            +NA   L +++LVEA+W    + P  EE+  N + + G  +  +  F  +G  +T ET +   ++P II ++  I R  DD+   K +++   D S I  YM+E+  + A+EA       +  AWK +NKE L P          SLNLAR++ ++Y   D
Sbjct:  372 KNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVT-AQEAYDVFNKHVESAWKDVNKEFLKPTEMPTEVLNRSLNLARVMDVLYREGD 531          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 61/182 (33.52%), Postives = 92/182 (50.55%), Query Frame = -2
Query:  158 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFS-ASFTRASLNLARMVPLMYSYDDNQRLPSLEHFIKSLLSESV 700
            +RNA+ S   +F+ EAKW +SG++P  EEYLKNG  SSG   A +     L   +    ++ ID         +++LRL  D    K +   G++ S I  YMK+H  S  E+A       ISDA + LN E L P+  S  S  + + ++ R    +Y Y D   + S E   K+L+ ++V
Sbjct:  452 IRNAYESHFDSFMHEAKWISSGYLPTFEEYLKNGKVSSGSRTATLQPILTLDVPLPNYILQEIDYPSRFNDLASSLLRLRGDTRCYKADRARGEEASAISCYMKDHPGSTEEDALNHINVMISDAIRELNWELLRPDSKSPISSKKHAFDITRAFHHLYKYRDGYTVASSE--TKNLVMKTV 631          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 59/182 (32.42%), Postives = 92/182 (50.55%), Query Frame = -2
Query:  158 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFS-ASFTRASLNLARMVPLMYSYDDNQRLPSLEHFIKSLLSESV 700
            ++NAW +L   F+ EAKW +S ++P  EEYLKN   SSG  +A +     L   + +  ++ ID         ++ILRL  D    K +   G++ S I  YMK+H  S  E+A       ISDA + LN E L P+  S  S  + + ++ R    +Y Y D   + + E   K+L+ ++V
Sbjct:  452 IQNAWEALFDTFMQEAKWISSSYLPTFEEYLKNAKVSSGSRIATLQPILTLDVPLPDYILQEIDYPSRFNELASSILRLRGDTRCYKADRARGEEASAISCYMKDHPGSIEEDALNHINAMISDAIRELNWELLRPDSKSPISSKKHAFDITRAFHHVYKYRDGYTVSNNE--TKNLVMKTV 631          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 50/161 (31.06%), Postives = 82/161 (50.93%), Query Frame = -2
Query:  215 RNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDD 697
            +NA   L +++LVEA+W    + P  EE+  N + + G  +  +  F  +G  +T ET +   ++P II ++  I R  DD+   K +++   D S I  YM+E+  S A+EA       +  AWK +N+E   P          SLNLAR++ ++Y   D
Sbjct:  372 KNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVS-AQEAYDVFNKHVESAWKDVNQEFQKPTEMPTEVLNRSLNLARVMDVLYREGD 531          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 51/159 (32.08%), Postives = 80/159 (50.31%), Query Frame = -2
Query:  227 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPN-PFSASFTRASLNLARMVPLMY 700
            L+ +W SL + +L EA W+ +G+ P  EEYL N   S      +  ++F L + I E  +E +     I+  + TILRL DDLG+++ E + G     I  YM +   ++  EA +     I +AWK +N      + PF+     A+ NLAR    +Y
Sbjct:  407 LQRSWVSLVEGYLKEAYWYYNGYKPSLEEYLNNAKISISAPTIISQLYFTLANSIDETAIESLYQYHNILYLSGTILRLADDLGTSQHELERGDVPKAIQCYMNDTN-ASEREAVEHVKFLIREAWKEMNTVTTASDCPFTDDLVAAAANLARAAQFIY 564          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 56/184 (30.43%), Postives = 91/184 (49.46%), Query Frame = -2
Query:  155 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDDNQRLPSL--EHFIKSLLSESVP 700
            L+ +       ++ EAKW    ++   +EY +N I SSG +  +   F  +      +  E + S+P I  ++  I R  DD+ S + E++     + I  YM++   S  E A +   N +SDAWK LN+E + P+ F        LNL+R++ + Y Y D    P L  EH + SLL E++P
Sbjct:  365 LKKSLQKTANGYMQEAKWLKKDYIATFDEYKENAILSSGYYALIAMTFVRMTDVAKLDAFEWLSSHPKIRVASEIISRFTDDISSYEFEHKREHVATGIDCYMQQFGVS-KERAVEVMGNIVSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFYRYQDAYTNPKLLKEHIV-SLLIETIP 546          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 54/185 (29.19%), Postives = 89/185 (48.11%), Query Frame = -2
Query:  158 RNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEET----VELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDDNQR-LPSLEHFIKSLLSESV 697
            R A+  L + + +EA W   G +P  ++YL NG  ++G+ +     F     G+ E T     + +++NP +  ++   +RL +DL S   E Q G   S I  YM +H  S  +EA K      +D WK +N+EC+  +  S       +NLAR+  + Y Y D       L+ F+K L  + +
Sbjct:  420 REAFQELVRGYYLEAVWRDEGKIPSFDDYLYNGSMTTGLPLVSTASFM----GVQEITGLNEFQWLETNPKLSYASGAFIRLVNDLTSHVTEQQRGHVASCIDCYMNQHGVSK-DEAVKILQKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVSYKYGDGYTDSQQLKQFVKGLFVDPI 599          
The following BLAST results are available for this feature:
BLAST of CN182412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
DCS1_GOSAR1.237e-1732.92(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
MYRS1_ARATH1.616e-1729.67Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
DCS3_GOSAR4.701e-1732.92(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
DCS2_GOSAR4.701e-1731.68(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
TPSDB_ABIGR1.786e-1633.52Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
TPSDA_ABIGR2.333e-1632.42Limonene synthase, chloroplastic OS=Abies grandis ... [more]
DCS4_GOSAR3.047e-1631.06(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
SSS_SALOF6.788e-1632.08(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
HUMS_ARATH8.866e-1630.43Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
CASS_RICCO1.158e-1529.19Casbene synthase, chloroplastic OS=Ricinus communi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182412 ID=CN182412; Name=CN182412; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTAGTTCTCCAAAAGAGAATTAGGATAAAACTTAT
AAAATGGAAATTAAAAAGTTACTCTCCTTACAACTTATTTGAGCCACATA
ATTTTTCATAGAAAAGGAGACTGATTAATTAATTAATTAATAAACTCCTT
CAGTGGGTACGCTTTCAGAGAGTAGGGACTTAATGAAATGTTCGAGGCTT
GGTAGGCGTTGGTTGTCATCGTAACTGTACATCAAGGGGACCATTCTTGC
AAGATTGAGAGAAGCCCTCGTGAACGATGCTGAGAATGGATTTGGGCAGA
GGCATTCTTTGTTGAGCCGCTTCCATGCGTCTGAAATTTTATTGATAGCA
CTCTTTTGTGCCTCTTCGGCGGCAGAATATCGGTGTTCCTTCATGTAGTA
ATGGATGTAAGATCCATCCTTACCATCTTGATTCTCATCCTTTGCACTTC
CCAAGTCATCCCAGAGCCGAAGAATTGTTGCGGTTGATGATATTATGGCC
GGGTTACTGTCAATAAGCTCCACCGTTTCCTCAGTTATACCATGACCTAG
GAGAAAAAAAATGTGGACCAGTGCCACATGTACTCCTGAACTCTCAATCC
CATTCTTCAAGTATTCTTCAGACTCAGGCATGTGTCCAGAAGCAAACCAT
TTGGCTTCTACTAGAAATGCTTTGCACAAACTTGTCCACGCATTTCGGAG
GGACTGT
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