CN189036

Overview
NameCN189036
Unique NameCN189036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_CHICK (Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL EV LG +YELK A ++ K P GKHS KGLGKT P +       D V VP G    + +  + L+YNEYIVY+ AQV +++LLK++F++K
Sbjct:  916 ILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAP-DPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 1007          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP2_ARATH (Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana GN=PARP2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL EV LG++ EL  + Y  D  P GK STKG+GKT P  S+     D V VP GKP   +     L+YNEYIVYN  Q+KM+++++V+F++K
Sbjct:  543 LLLCEVALGDMNELLYSDYNADNLPPGKLSTKGVGKTAPNPSEAQTLEDGVVVPLGKPVERSCSKGMLLYNEYIVYNVEQIKMRYVIQVKFNYK 636          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PRP2B_ORYSJ (Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa subsp. japonica GN=PARP2-B PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            MLL EV LGE+ EL    +  D  P+GK STKG+G+T P  ++     D + +P GKP     R   LMYNEYIVYN  Q++M+++L V F+ K
Sbjct:  509 MLLCEVALGEMNELLYGDFGADNLPNGKLSTKGVGQTEPNIAESKITDDGMVIPLGKPEKVPSRRGSLMYNEYIVYNVDQIRMRYILNVNFNFK 602          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PRP2A_ORYSJ (Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa subsp. japonica GN=PARP2-A PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL EV LGE+ EL  A Y  +  P GK STKG+G+T P  ++     D V VP GKP     +   L+YNE+IVYN  Q++M+++L V F+ K
Sbjct:  565 LLLCEVALGEMNELLNADYDANNLPKGKLSTKGVGQTEPNTAESKITDDGVVVPLGKPKAEPSKRGSLLYNEFIVYNVDQIRMRYVLHVSFNFK 658          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP_DROME (Poly [ADP-ribose] polymerase OS=Drosophila melanogaster GN=Parp PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = -2
Query:  419 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHH 694
            MLLSEV LG++ E   AKY++K  + KHS  G G+T+P  +      D V +P G+        S L+YNEYIVY+ AQV +Q+L ++ F +
Sbjct:  901 MLLSEVALGDMMECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGVEIPYGETITDEHLKSSLLYNEYIVYDVAQVNIQYLFRMEFKY 992          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP2_MAIZE (Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKY-MDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL EV LG++ EL  A Y  +  P GK  +KG+G+T P   +     D V VP G+P     +   L+YNEYIVYN  Q++M+++L V F+ K
Sbjct:  558 LLLCEVALGDMNELLNADYDANNLPKGKLRSKGVGQTAPNMVESKVADDGVVVPLGEPKQEPSKRGGLLYNEYIVYNVDQIRMRYVLHVNFNFK 651          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP2_HUMAN (Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = -2
Query:  422 MLLSEVGLGEVYELKKAK-YMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASE---LMYNEYIVYNTAQVKMQFLLKVRFH 694
            +LLSEV LG+  EL +A    +    GKHSTKGLGK  P  + FV      TVP G  + + +   +   L YNEYIVYN  QV+M++LLKV+F+
Sbjct:  485 LLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLNGS-TVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFN 578          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP3_ARATH (Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = -2
Query:  416 DGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 622
            D K   KGLG+   +ES+   WRDD+ VPCG+  PS  + S L YNEY VY+  Q  ++FL++V++  K
Sbjct:  737 DKKIGVKGLGRKKTEESEHFMWRDDIKVPCGRLVPSEHKDSPLEYNEYAVYDPKQTSIRFLVEVKYEEK 805          
The following BLAST results are available for this feature:
BLAST of CN189036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PARP1_CHICK1.563e-1748.39Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN... [more]
PARP2_ARATH7.756e-1746.81Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thal... [more]
PRP2B_ORYSJ9.481e-1545.74Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa s... [more]
PRP2A_ORYSJ3.603e-1444.68Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa s... [more]
PARP_DROME8.026e-1442.39Poly [ADP-ribose] polymerase OS=Drosophila melanog... [more]
PARP2_MAIZE1.977e-1241.49Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP... [more]
PARP2_HUMAN5.752e-1246.32Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=... [more]
PARP3_ARATH1.281e-1144.93Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189036 ID=CN189036; Name=CN189036; organism=Citrus sinensis; type=EST; length=695bp
TTTTTTTTTTTTTTTTTGTCTTTGCATGTTTCTTAAATTTATACCTGATT
GACAGGGACACTTATCCGGAAATAATCCTGCCAAATGTAGTACAAGAAAC
TTGGATTTTGTGTATCTAATTGTGTTGGCATAATCTAACAAAAGGAAAGC
TAACGCCAGATGATATGGCGGAAGATAGCATCCTCACTAAAGCTTAAGAA
ACACCAAAGTACCCTTTTTTTACACATTTACCAACATCATTTACATAGCC
AAAAGCAGCAGTTGAAAGATCTCCAGGCAAACCCCAAAATGAGATCTTAC
AATCTTATCCAAGAGTTAAAATTTCTCATGTGGTAATTAAAGACATTCAG
ATATTCAGACAATCAGTCATGACCTTTCCCAAAAGAGAGTGGGCATCCAG
TTACCTCCTTCATCTCTTGTGATGAAACCTCACCTTCAACAGGAACTGCA
TCTTAACTTGAGCAGTATTATAAACAATGTATTCATTGTACATCAGCTCA
GAAGCCCTGACATTTGAAGGTGCTGGTTTTCCACATGGCACAGTGACATC
ATCTCTCCACTTCACAAAATCAGATTCCTGTGGTACAGTCTTGCCAAGTC
CTTTAGTGGAGTGCTTCCCATCAGGTGGTTTATCCATATACTTCGCCTTC
TTGAGCTCATAAACCTCTCCCAAGCCCACTTCACTCAGAAGCATT
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