CN182405

Overview
NameCN182405
Unique NameCN182405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_DROME (V-type proton ATPase subunit B OS=Drosophila melanogaster GN=Vha55 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.420e-58
Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDA 422
            GYITEGQIY+DRQL NRQIYPP+NVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYA YAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KFE+ F++QG Y++R +F+SLD+ W LLRIFP+E+L RIP   L ++Y RD+
Sbjct:  350 GYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPRDS 488          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_MANSE (V-type proton ATPase subunit B OS=Manduca sexta GN=VHA55 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.161e-58
Identity = 106/139 (76.26%), Postives = 123/139 (88.49%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDA 422
            GYITEGQIY+DRQL NRQIYPP+NVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYA YAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KFE+ F+ QG Y++R +F+SLD+ W LLRIFP+E+L RIP   L ++Y RD+
Sbjct:  354 GYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPRDS 492          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_NEUCR (V-type proton ATPase subunit B OS=Neurospora crassa GN=vma-2 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.676e-57
Identity = 107/141 (75.89%), Postives = 125/141 (88.65%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQI++DR L NR IYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYA YAIG+D  AMKAVVGEEALS+ED L LEFLDKFER F+AQG Y+SR IF+SLDLAW+LLRI+ +++L+RIP K +D++YSR AA+
Sbjct:  345 GYITEGQIFVDRGLHNRGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGRDAAAMKAVVGEEALSNEDKLSLEFLDKFERSFIAQGPYESRTIFESLDLAWSLLRIYRKDMLNRIPKKIIDEFYSRSAAD 485          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_CANTR (V-type proton ATPase subunit B OS=Candida tropicalis GN=VMA2 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.565e-57
Identity = 106/138 (76.81%), Postives = 124/138 (89.86%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRD 419
            GYITEGQI+IDRQL NR IYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYA YAIGKD  AMKAVVGEEALS+ED L LEFL+KFE+ F++QGAY++R IF+SLDLAW+LLRI+P+E+L+RI  K L+++Y RD
Sbjct:  351 GYITEGQIFIDRQLHNRGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVVGEEALSTEDKLSLEFLEKFEKNFISQGAYENRTIFESLDLAWSLLRIYPKEMLNRISPKILEEFYGRD 488          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_SCHPO (V-type proton ATPase subunit B OS=Schizosaccharomyces pombe GN=vma2 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 5.962e-57
Identity = 107/140 (76.43%), Postives = 122/140 (87.14%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 425
            GYITEGQI++DRQL N  IYPPINVLPSLSRLMKSAIGEGMTR DH DVSNQLYA YAIG+D  +MK+VVGEEALS ED L LEFL KFE+ F++QGAY++R IF++LDLAW+LLRIFPRE+L RIP K LDQYYSR +A
Sbjct:  348 GYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSSA 487          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_DICDI (V-type proton ATPase subunit B OS=Dictyostelium discoideum GN=vatB PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.047e-56
Identity = 107/139 (76.98%), Postives = 120/139 (86.33%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDA 422
            GYITEGQI+IDRQ+ NRQIYPPINVLPSLSRLMKSAIG+ MTR DHS+VSNQ+YANYAIGKDVQAMKAVVGEEALSSED LYLEFL++FE  FV Q  Y++R+IF SLDL W+LLR FP  LL RI  KT+ QYYSR +
Sbjct:  347 GYITEGQIFIDRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYANYAIGKDVQAMKAVVGEEALSSEDKLYLEFLERFESSFVGQNHYENRDIFNSLDLGWSLLRTFPSNLLKRITEKTIKQYYSRSS 485          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_CYACA (V-type proton ATPase subunit B OS=Cyanidium caldarium PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.609e-56
Identity = 107/137 (78.10%), Postives = 119/137 (86.86%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 416
            GYITE QIY+DRQL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYA YA+GKD  AM+AVVG EALS EDLLYLEF DKFER+FV QGAY+ R+I+ SLD+AW LLRIFP ++L RIP K L +YY R
Sbjct:  348 GYITEEQIYLDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYAAYAMGKDALAMRAVVGVEALSQEDLLYLEFHDKFERRFVNQGAYERRDIYTSLDMAWDLLRIFPVQMLRRIPEKILQEYYHR 484          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 7.288e-55
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 416
            GYITEGQI++DRQL N+ IYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYA YAIGKD  AMKAVVGEEALS ED L LEFL+KFE+ F+ QGAY+ R +F+SLD AW+LLRI+P+E+L+RI  K LD++Y R
Sbjct:  351 GYITEGQIFVDRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVVGEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIYPKEMLNRISPKILDEFYDR 487          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_ENCCU (V-type proton ATPase subunit B OS=Encephalitozoon cuniculi GN=VMA2 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.223e-53
Identity = 97/136 (71.32%), Postives = 120/136 (88.24%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYS 413
            GYITEGQIY+DRQ+ NRQIYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYA YAIGKD QAMKAVVGE++LS+ED + +EFL++FER+F++Q   + R + QSLD+AW LL++FPRE+L+RIP   LD+++S
Sbjct:  335 GYITEGQIYVDRQMHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAQAMKAVVGEDSLSAEDRISIEFLERFEREFISQRHDELRTVDQSLDIAWDLLKVFPREMLNRIPSDILDEFHS 470          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB_PLAFA (V-type proton ATPase subunit B OS=Plasmodium falciparum GN=VAPB PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.194e-51
Identity = 96/141 (68.09%), Postives = 117/141 (82.98%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQI++DR L NRQIYPPINVLPSLSRLMKS IG  MTR DH  VS+QLY+NYAI +DV+AMKAV+GEEALS++D+LYLEFLDKFE++F+ Q  Y+ R+I+QSLD+AW LLRIFP ++L +I    L +YY R  AN
Sbjct:  354 GYITEGQIFVDRNLYNRQIYPPINVLPSLSRLMKSGIGHNMTRIDHPYVSDQLYSNYAIAQDVKAMKAVIGEEALSNDDILYLEFLDKFEKRFITQNTYECRDIYQSLDIAWELLRIFPEDMLKKIKTDILSKYYPRHHAN 494          
The following BLAST results are available for this feature:
BLAST of CN182405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB_DROME2.420e-5876.26V-type proton ATPase subunit B OS=Drosophila melan... [more]
VATB_MANSE3.161e-5876.26V-type proton ATPase subunit B OS=Manduca sexta GN... [more]
VATB_NEUCR2.676e-5775.89V-type proton ATPase subunit B OS=Neurospora crass... [more]
VATB_CANTR4.565e-5776.81V-type proton ATPase subunit B OS=Candida tropical... [more]
VATB_SCHPO5.962e-5776.43V-type proton ATPase subunit B OS=Schizosaccharomy... [more]
VATB_DICDI5.047e-5676.98V-type proton ATPase subunit B OS=Dictyostelium di... [more]
VATB_CYACA8.609e-5678.10V-type proton ATPase subunit B OS=Cyanidium caldar... [more]
VATB_YEAST7.288e-5574.45V-type proton ATPase subunit B OS=Saccharomyces ce... [more]
VATB_ENCCU5.223e-5371.32V-type proton ATPase subunit B OS=Encephalitozoon ... [more]
VATB_PLAFA2.194e-5168.09V-type proton ATPase subunit B OS=Plasmodium falci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182405 ID=CN182405; Name=CN182405; organism=Citrus sinensis; type=EST; length=608bp
GAGGGGGATATATCACCGAGGGGCAGATTTACATTGACAGGCAGCTCCAG
AACAGACAGATATATCCTCCGATCAATGTCCTTCCGTCCCTATCTCGTCT
GATGAAGAGTGCTATTGGTGAGGGGATGACTCGTAGGGACCATTCCGATG
TTTCCAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCA
ATGAAGGCTGTGGTCGGAGAAGAAGCACTTTCTTCTGAGGATCTGCTGTA
CTTAGAGTTCCTGGACAAGTTTGAGAGAAAATTTGTTGCTCAAGGAGCTT
ATGACTCTAGGAATATCTTCCAATCTCTTGATCTGGCATGGACACTTCTT
CGCATCTTTCCTCGTGAGCTTCTCCACCGTATACCAGGAAAGACCCTTGA
CCAGTACTACAGCCGTGATGCAGCTAATTGATGAAGAAGCCCTCTCGTAC
TGACATGTACCTTGCTGCCTCATTGGTTTTGTCTACAATTTGTTTATTCA
CCAGCTTTTTGATATAGGTTGCATTTCTCCGTTGAGCAGAAATAATAAAG
GTTGTAGTCCACTTGAGGCCCCCGTGCGAAGCTCTTCGTCTGGTCAAAAG
ATGCAAAT
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