CN182404

Overview
NameCN182404
Unique NameCN182404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_PYRAE (V-type ATP synthase beta chain OS=Pyrobaculum aerophilum GN=atpB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.052e-26
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = -2
Query:  386 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 796
            GYITEGQ+ ++  +  + IYPP +V+ SLSRL K AIGEG TR DH DV+N L A Y+   +++ +  +VGE  L   +  YL F D FE++F+ QG Y+ R+  ++LD+ W +L I P + L     +   ++Y R
Sbjct:  323 GYITEGQLVLSRAMWGKGIYPPFDVIMSLSRLAKDAIGEGKTREDHKDVANTLIAAYSKALEIRNLATLVGERNLGWRERRYLRFADAFEQRFIKQGYYERRSFEETLDIGWDVLSILPEDELTNARPQITQKFYRR 459          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_ANADE (V-type ATP synthase beta chain OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=atpB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.160e-25
Identity = 68/140 (48.57%), Postives = 83/140 (59.29%), Query Frame = -2
Query:  377 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 796
            GYITEGQI ++  L  R +YPPI+VLPSLSRLM    G G TR DH  V++QLYA YA G+DV+ M A+VG   L  E+   L F D FE   V QG    R I  +L+  W LL  FP   L RIP + L    ++ AA
Sbjct:  328 GYITEGQIVLSRDLDRRGVYPPIDVLPSLSRLMGLGAGPGKTRDDHRPVADQLYAFYARGRDVRRMAAIVGAANLGEEEKRLLAFADAFEDGLVGQGG-TFRTIEDTLEAGWRLLSGFPPAALTRIPERLLRARPAQPAA 466          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_THENV (V-type ATP synthase beta chain OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=atpB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.515e-25
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = -2
Query:  386 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 796
            GYITEGQ+ ++  +  + IYPP +V+ SLSRL K AIGEG TR DH DV+N L + Y+   +++ +  +VGE  L   +  YL F D FE++F+ QG Y+ R+  ++LD+ W ++ I P + L     +   ++Y R
Sbjct:  323 GYITEGQLVLSRSMWGKGIYPPFDVIMSLSRLAKDAIGEGKTREDHKDVANTLISAYSKALELRNLATLVGERNLGWRERRYLRFADAFEQRFIKQGYYERRSFEETLDIGWDVMSILPEDELTNARPQITQKFYRR 459          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_CENSY (V-type ATP synthase beta chain OS=Cenarchaeum symbiosum GN=atpB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.675e-24
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = -2
Query:  380 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDA 796
            GYITEGQ+ +   L  + +YPP+N+L SLSRLMK  IGEG TR DH ++SNQ Y  Y+  ++V+A+  +VG+  L+  DL Y+   D  E++ + Q   ++R I ++L + W  +   P+  L ++  K ++++Y   A
Sbjct:  324 GYITEGQVVLGRDLFRQGVYPPVNILMSLSRLMKDGIGEGRTREDHQEISNQNYDAYSRAQEVRALAGIVGKAGLTDIDLRYMGVGDSLEQRLLTQATDENRTIEETLGIMWDTVSGLPKNELTKVKDKYVEKFYKGSA 462          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_GEOUR (V-type ATP synthase beta chain OS=Geobacter uraniireducens (strain Rf4) GN=atpB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.312e-24
Identity = 55/121 (45.45%), Postives = 85/121 (70.25%), Query Frame = -2
Query:  434 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRE 796
            GYITEGQI ++ +L  + ++PP++VLPSLSRLM+  IG G TR DH  ++++LY +YA G+D++ ++A+VG E +++ D + L+F D FER+ + QG+   R+I  SLD    LL+ F  E
Sbjct:  319 GYITEGQIVLSRELHQKGVFPPVDVLPSLSRLMQRGIGAGHTRSDHRAIADRLYRHYAKGRDLRRLEAIVGREGMTAGDRVMLDFADAFERELIHQGS-ARRDINGSLDRGVELLKRFSLE 438          
The following BLAST results are available for this feature:
BLAST of CN182404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB_PYRAE3.052e-2641.61V-type ATP synthase beta chain OS=Pyrobaculum aero... [more]
VATB_ANADE1.160e-2548.57V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB_THENV1.515e-2540.15V-type ATP synthase beta chain OS=Thermoproteus ne... [more]
VATB_CENSY1.675e-2438.13V-type ATP synthase beta chain OS=Cenarchaeum symb... [more]
VATB_GEOUR8.312e-2445.45V-type ATP synthase beta chain OS=Geobacter uranii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182404 ID=CN182404; Name=CN182404; organism=Citrus sinensis; type=EST; length=800bp
CTCGAAGGTTTTTTTCCCTCTCAAGGAAAAGTCCAACAAAGACAGAATTA
CAGGATAAATAGAATAATCATCAAACTTGGGCATTATAATCCTCACTACC
ATGGTTTCAATTTTGAGAAAAAGTATCCAGACCACACTAATAAATAGAAG
ATACAGGAATTACAAGATCTAAAAAGCACTCCGCTGAAAGAATATTTGCA
TCTTTTGACCAGACGAAGAGCTTCGCACGGGGGCCTCAAGTGGACTACAA
CCTTTATTATTTCTGCTCAACGGAGAAATGCAACCTATATCAAAAAGCTG
GTGAATAAACAAATTGTAGACAAAACCAATGAGGCAGCAAGGTACATGTC
AGTACGAGAGGGCTTCTTCATCAATTAGCTGCATCACGGCTGTAGTACTG
GTCAAGGGTCTTTCCTGGTATACGGTGGAGAAGCTCACGAGGAAAGATGC
GAAGAAGTGTCCATGCCAGATCAAGAGATTGGAAGATATTCCTAGAGTCA
TAAGCTCCTTGAGCAACAAATTTTCTCTCAAACTTGTCCAGGAACTCTAA
GTACAGCAGATCCTCAGAAGAAAGTGCTTCTTCTCCGACCACAGCCTTCA
TTGCCTGGACATCCTTCCCAATGGCATAATTTGCATACAGCTGGTTGGAA
ACATCGGAATGGTCCCTACGAGTCATCCCCTCACCAATAGCACTCTTCAT
CAGACGAGATAGGGACGGAAGGACATTGATCGGAGGATATATCTGTCTGT
TCTGGAGCTGCCCTGTCATGTAAATCTGCCCCTCGGTGATATATCCCCCT
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