CN182404

Overview
NameCN182404
Unique NameCN182404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_DROME (V-type proton ATPase subunit B OS=Drosophila melanogaster GN=Vha55 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.830e-56
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = -2
Query:  380 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDA 796
            GYITEGQIY+  QL NRQIYPP+NVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYA YAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KFE+ F++QG Y++R +F+SLD+ W LLRIFP+E+L RIP   L ++Y RD+
Sbjct:  350 GYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPRDS 488          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_MANSE (V-type proton ATPase subunit B OS=Manduca sexta GN=VHA55 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.697e-56
Identity = 104/139 (74.82%), Postives = 121/139 (87.05%), Query Frame = -2
Query:  380 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDA 796
            GYITEGQIY+  QL NRQIYPP+NVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYA YAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KFE+ F+ QG Y++R +F+SLD+ W LLRIFP+E+L RIP   L ++Y RD+
Sbjct:  354 GYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPRDS 492          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_NEUCR (V-type proton ATPase subunit B OS=Neurospora crassa GN=vma-2 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.129e-55
Identity = 105/141 (74.47%), Postives = 123/141 (87.23%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQI++   L NR IYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYA YAIG+D  AMKAVVGEEALS+ED L LEFLDKFER F+AQG Y+SR IF+SLDLAW+LLRI+ +++L+RIP K +D++YSR AA+
Sbjct:  345 GYITEGQIFVDRGLHNRGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGRDAAAMKAVVGEEALSNEDKLSLEFLDKFERSFIAQGPYESRTIFESLDLAWSLLRIYRKDMLNRIPKKIIDEFYSRSAAD 485          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_SCHPO (V-type proton ATPase subunit B OS=Schizosaccharomyces pombe GN=vma2 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 6.972e-55
Identity = 105/140 (75.00%), Postives = 120/140 (85.71%), Query Frame = -2
Query:  377 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 796
            GYITEGQI++  QL N  IYPPINVLPSLSRLMKSAIGEGMTR DH DVSNQLYA YAIG+D  +MK+VVGEEALS ED L LEFL KFE+ F++QGAY++R IF++LDLAW+LLRIFPRE+L RIP K LDQYYSR +A
Sbjct:  348 GYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSSA 487          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_CANTR (V-type proton ATPase subunit B OS=Candida tropicalis GN=VMA2 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.972e-55
Identity = 103/138 (74.64%), Postives = 122/138 (88.41%), Query Frame = -2
Query:  383 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRD 796
            GYITEGQI++  QL NR IYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYA YAIGKD  AMKAVVGEEALS+ED L LEFL+KFE+ F++QGAY++R IF+SLDLAW+LLRI+P+E+L+RI  K L+++Y RD
Sbjct:  351 GYITEGQIFIDRQLHNRGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVVGEEALSTEDKLSLEFLEKFEKNFISQGAYENRTIFESLDLAWSLLRIYPKEMLNRISPKILEEFYGRD 488          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_CYACA (V-type proton ATPase subunit B OS=Cyanidium caldarium PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.902e-54
Identity = 105/137 (76.64%), Postives = 117/137 (85.40%), Query Frame = -2
Query:  386 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 796
            GYITE QIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYA YA+GKD  AM+AVVG EALS EDLLYLEF DKFER+FV QGAY+ R+I+ SLD+AW LLRIFP ++L RIP K L +YY R
Sbjct:  348 GYITEEQIYLDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYAAYAMGKDALAMRAVVGVEALSQEDLLYLEFHDKFERRFVNQGAYERRDIYTSLDMAWDLLRIFPVQMLRRIPEKILQEYYHR 484          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_DICDI (V-type proton ATPase subunit B OS=Dictyostelium discoideum GN=vatB PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.708e-54
Identity = 104/139 (74.82%), Postives = 118/139 (84.89%), Query Frame = -2
Query:  380 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDA 796
            GYITEGQI++  Q+ NRQIYPPINVLPSLSRLMKSAIG+ MTR DHS+VSNQ+YANYAIGKDVQAMKAVVGEEALSSED LYLEFL++FE  FV Q  Y++R+IF SLDL W+LLR FP  LL RI  KT+ QYYSR +
Sbjct:  347 GYITEGQIFIDRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYANYAIGKDVQAMKAVVGEEALSSEDKLYLEFLERFESSFVGQNHYENRDIFNSLDLGWSLLRTFPSNLLKRITEKTIKQYYSRSS 485          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.522e-53
Identity = 100/137 (72.99%), Postives = 117/137 (85.40%), Query Frame = -2
Query:  386 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 796
            GYITEGQI++  QL N+ IYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYA YAIGKD  AMKAVVGEEALS ED L LEFL+KFE+ F+ QGAY+ R +F+SLD AW+LLRI+P+E+L+RI  K LD++Y R
Sbjct:  351 GYITEGQIFVDRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVVGEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIYPKEMLNRISPKILDEFYDR 487          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_ENCCU (V-type proton ATPase subunit B OS=Encephalitozoon cuniculi GN=VMA2 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.108e-51
Identity = 95/136 (69.85%), Postives = 118/136 (86.76%), Query Frame = -2
Query:  389 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYS 796
            GYITEGQIY+  Q+ NRQIYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYA YAIGKD QAMKAVVGE++LS+ED + +EFL++FER+F++Q   + R + QSLD+AW LL++FPRE+L+RIP   LD+++S
Sbjct:  335 GYITEGQIYVDRQMHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAQAMKAVVGEDSLSAEDRISIEFLERFEREFISQRHDELRTVDQSLDIAWDLLKVFPREMLNRIPSDILDEFHS 470          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_PLAFA (V-type proton ATPase subunit B OS=Plasmodium falciparum GN=VAPB PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.566e-49
Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQI++   L NRQIYPPINVLPSLSRLMKS IG  MTR DH  VS+QLY+NYAI +DV+AMKAV+GEEALS++D+LYLEFLDKFE++F+ Q  Y+ R+I+QSLD+AW LLRIFP ++L +I    L +YY R  AN
Sbjct:  354 GYITEGQIFVDRNLYNRQIYPPINVLPSLSRLMKSGIGHNMTRIDHPYVSDQLYSNYAIAQDVKAMKAVIGEEALSNDDILYLEFLDKFEKRFITQNTYECRDIYQSLDIAWELLRIFPEDMLKKIKTDILSKYYPRHHAN 494          
The following BLAST results are available for this feature:
BLAST of CN182404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB_DROME2.830e-5674.82V-type proton ATPase subunit B OS=Drosophila melan... [more]
VATB_MANSE3.697e-5674.82V-type proton ATPase subunit B OS=Manduca sexta GN... [more]
VATB_NEUCR3.129e-5574.47V-type proton ATPase subunit B OS=Neurospora crass... [more]
VATB_SCHPO6.972e-5575.00V-type proton ATPase subunit B OS=Schizosaccharomy... [more]
VATB_CANTR6.972e-5574.64V-type proton ATPase subunit B OS=Candida tropical... [more]
VATB_CYACA5.902e-5476.64V-type proton ATPase subunit B OS=Cyanidium caldar... [more]
VATB_DICDI7.708e-5474.82V-type proton ATPase subunit B OS=Dictyostelium di... [more]
VATB_YEAST8.522e-5372.99V-type proton ATPase subunit B OS=Saccharomyces ce... [more]
VATB_ENCCU6.108e-5169.85V-type proton ATPase subunit B OS=Encephalitozoon ... [more]
VATB_PLAFA2.566e-4966.67V-type proton ATPase subunit B OS=Plasmodium falci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182404 ID=CN182404; Name=CN182404; organism=Citrus sinensis; type=EST; length=800bp
CTCGAAGGTTTTTTTCCCTCTCAAGGAAAAGTCCAACAAAGACAGAATTA
CAGGATAAATAGAATAATCATCAAACTTGGGCATTATAATCCTCACTACC
ATGGTTTCAATTTTGAGAAAAAGTATCCAGACCACACTAATAAATAGAAG
ATACAGGAATTACAAGATCTAAAAAGCACTCCGCTGAAAGAATATTTGCA
TCTTTTGACCAGACGAAGAGCTTCGCACGGGGGCCTCAAGTGGACTACAA
CCTTTATTATTTCTGCTCAACGGAGAAATGCAACCTATATCAAAAAGCTG
GTGAATAAACAAATTGTAGACAAAACCAATGAGGCAGCAAGGTACATGTC
AGTACGAGAGGGCTTCTTCATCAATTAGCTGCATCACGGCTGTAGTACTG
GTCAAGGGTCTTTCCTGGTATACGGTGGAGAAGCTCACGAGGAAAGATGC
GAAGAAGTGTCCATGCCAGATCAAGAGATTGGAAGATATTCCTAGAGTCA
TAAGCTCCTTGAGCAACAAATTTTCTCTCAAACTTGTCCAGGAACTCTAA
GTACAGCAGATCCTCAGAAGAAAGTGCTTCTTCTCCGACCACAGCCTTCA
TTGCCTGGACATCCTTCCCAATGGCATAATTTGCATACAGCTGGTTGGAA
ACATCGGAATGGTCCCTACGAGTCATCCCCTCACCAATAGCACTCTTCAT
CAGACGAGATAGGGACGGAAGGACATTGATCGGAGGATATATCTGTCTGT
TCTGGAGCTGCCCTGTCATGTAAATCTGCCCCTCGGTGATATATCCCCCT
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