CN182404

Overview
NameCN182404
Unique NameCN182404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_SULIK (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 69/135 (51.11%), Postives = 92/135 (68.15%), Query Frame = -2
Query:  392 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 796
            GYITEGQI +   L N+ IYPPINVL SLSRL K  IGEG TR DH DVSNQL+A+YA   D + + A++GE++LS  D  YL F + FERKFV+QG  ++R+I  +LD+ W +L + P   L  I  + + +Y+
Sbjct:  322 GYITEGQIVLDRALYNKGIYPPINVLMSLSRLAKDGIGEGKTRDDHKDVSNQLFASYARAVDTRGLAAIIGEDSLSEVDRKYLLFGELFERKFVSQGFNENRDIETTLDIGWEILSVLPESELTNIKTQYIKKYH 456          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_SULIA (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.16.27) GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 69/135 (51.11%), Postives = 92/135 (68.15%), Query Frame = -2
Query:  392 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 796
            GYITEGQI +   L N+ IYPPINVL SLSRL K  IGEG TR DH DVSNQL+A+YA   D + + A++GE++LS  D  YL F + FERKFV+QG  ++R+I  +LD+ W +L + P   L  I  + + +Y+
Sbjct:  322 GYITEGQIVLDRALYNKGIYPPINVLMSLSRLAKDGIGEGKTRDDHKDVSNQLFASYARAVDTRGLAAIIGEDSLSEVDRKYLLFGELFERKFVSQGFNENRDIETTLDIGWEILSVLPESELTNIKTQYIKKYH 456          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_CLOD6 (V-type ATP synthase beta chain OS=Clostridium difficile (strain 630) GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.293e-32
Identity = 65/138 (47.10%), Postives = 95/138 (68.84%), Query Frame = -2
Query:  383 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRD 796
            GYITEGQI ++ +L  + I PPI+VLPSLSRL    IG+G TR DH+D  NQL+A Y+ GKD + + A++GE ALS  DL+Y +F D+FE+++V+QG    R I Q+L++ W LL + P+  L RI  +  ++Y  ++
Sbjct:  320 GYITEGQIILSRELYKKDIQPPIDVLPSLSRLKDKGIGKGKTREDHADTMNQLFAAYSRGKDAKELMAILGESALSEIDLMYAKFADEFEKEYVSQGFRTDRTIEQTLEIGWKLLSMLPKSELKRIRDEYFEKYMPKE 457          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_STRPI (V-type ATP synthase beta chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=atpB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.083e-31
Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = -2
Query:  395 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 796
            GYITEGQI ++ +L N+   PPINVLPSLSRL     GEG TR DH+   NQL+A YA GK V+ +  V+GE ALS  D LY++F  +FE +++ QG Y +RNI  +L+L W LL I PR  L RI    LD+Y
Sbjct:  322 GYITEGQIILSHELYNQGYRPPINVLPSLSRLKDKGSGEGKTRGDHAPTMNQLFAAYAQGKKVEELAVVLGESALSDVDKLYVKFTKRFEEEYINQGFYKNRNIEDTLNLGWELLSILPRTELKRIKDDLLDKY 455          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_METS5 (V-type ATP synthase beta chain OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=atpB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.083e-31
Identity = 69/135 (51.11%), Postives = 90/135 (66.67%), Query Frame = -2
Query:  392 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 796
            GYITEGQI +   L N+ IYPPINVL SLSRL K  IGEG TR DH D+SNQL+A YA   D + + A++GE++LS  D  YL F D FERKFV+QG  ++R+I  +LD+ W +L I P   L  +    + +Y+
Sbjct:  325 GYITEGQITLDRSLYNKGIYPPINVLMSLSRLAKDGIGEGKTRDDHKDLSNQLFAAYAKAVDTRGLAAIIGEDSLSDTDKKYLMFGDAFERKFVSQGVNENRDIETTLDIGWEVLSILPERELTNVKVDYIKKYH 459          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_STRZJ (V-type ATP synthase beta chain OS=Streptococcus pneumoniae (strain JJA) GN=atpB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.415e-31
Identity = 70/134 (52.24%), Postives = 88/134 (65.67%), Query Frame = -2
Query:  395 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 796
            GYITEGQI ++ +L N+   PPINVLPSLSRL     GEG TR DH+   NQL+A YA GK V+ +  V+GE ALS  D LY+ F  +FE +++ QG Y +RNI  +L+L W LL I PR  L RI    LD+Y
Sbjct:  322 GYITEGQIILSHELYNQGYRPPINVLPSLSRLKDKGSGEGKTRGDHAPTMNQLFAAYAQGKKVEELAVVLGESALSDVDKLYVRFTKRFEEEYINQGFYKNRNIEDTLNLGWELLSILPRTELKRIKDDLLDKY 455          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_STRSV (V-type ATP synthase beta chain OS=Streptococcus sanguinis (strain SK36) GN=atpB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.415e-31
Identity = 70/134 (52.24%), Postives = 87/134 (64.93%), Query Frame = -2
Query:  395 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 796
            GYITEGQI ++ +L N    PPINVLPSLSRL     GEG TR DH+   NQL+A YA GK  + +  V+GE ALS  D LY+ F D+FE++++ QG   +R I +SLDL W LL I PR  L RI    +DQY
Sbjct:  322 GYITEGQIILSRELYNSGYRPPINVLPSLSRLKDKGSGEGKTRGDHAATMNQLFAAYAQGKQAKELAVVLGESALSETDKLYVRFTDRFEQEYINQGFQTNRTIEESLDLGWELLSILPRTELKRIKDDMIDQY 455          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_STRPN (V-type ATP synthase beta chain OS=Streptococcus pneumoniae GN=atpB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.415e-31
Identity = 70/134 (52.24%), Postives = 88/134 (65.67%), Query Frame = -2
Query:  395 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 796
            GYITEGQI ++ +L N+   PPINVLPSLSRL     GEG TR DH+   NQL+A YA GK V+ +  V+GE ALS  D LY+ F  +FE +++ QG Y +RNI  +L+L W LL I PR  L RI    LD+Y
Sbjct:  322 GYITEGQIILSHELYNQGYRPPINVLPSLSRLKDKGSGEGKTRGDHAPTMNQLFAAYAQGKKVEELAVVLGESALSDVDKLYVRFTKRFEEEYINQGFYKNRNIEDTLNLGWELLSILPRTELKRIKDDLLDKY 455          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_STRPM (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M28 GN=atpB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.415e-31
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = -2
Query:  395 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 796
            GYITEGQI ++ +L      PPINVLPSLSRL     GEG TR+DH+   NQL+A YA GK  + +  V+GE ALS  D LY+ F ++FE +++ QG Y +R+I +SLDL W LL I PR  L RI    LD+Y
Sbjct:  322 GYITEGQIILSQELYKNGFRPPINVLPSLSRLKDKGSGEGKTRQDHAATMNQLFAAYAQGKQAKELAVVLGESALSETDKLYVAFTNRFEEEYINQGLYTNRSIEESLDLGWELLSILPRTELKRIKDDMLDRY 455          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB_STRPJ (V-type ATP synthase beta chain OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=atpB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.415e-31
Identity = 70/134 (52.24%), Postives = 88/134 (65.67%), Query Frame = -2
Query:  395 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 796
            GYITEGQI ++ +L N+   PPINVLPSLSRL     GEG TR DH+   NQL+A YA GK V+ +  V+GE ALS  D LY+ F  +FE +++ QG Y +RNI  +L+L W LL I PR  L RI    LD+Y
Sbjct:  322 GYITEGQIILSHELYNQGYRPPINVLPSLSRLKDKGSGEGKTRGDHAPTMNQLFAAYAQGKKVEELAVVLGESALSDVDKLYVRFTKRFEEEYINQGFYKNRNIEDTLNLGWELLSILPRTELKRIKDDLLDKY 455          
The following BLAST results are available for this feature:
BLAST of CN182404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB_SULIK8.293e-3251.11V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB_SULIA8.293e-3251.11V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB_CLOD68.293e-3247.10V-type ATP synthase beta chain OS=Clostridium diff... [more]
VATB_STRPI1.083e-3152.24V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_METS51.083e-3151.11V-type ATP synthase beta chain OS=Metallosphaera s... [more]
VATB_STRZJ1.415e-3152.24V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_STRSV1.415e-3152.24V-type ATP synthase beta chain OS=Streptococcus sa... [more]
VATB_STRPN1.415e-3152.24V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_STRPM1.415e-3151.49V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPJ1.415e-3152.24V-type ATP synthase beta chain OS=Streptococcus pn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182404 ID=CN182404; Name=CN182404; organism=Citrus sinensis; type=EST; length=800bp
CTCGAAGGTTTTTTTCCCTCTCAAGGAAAAGTCCAACAAAGACAGAATTA
CAGGATAAATAGAATAATCATCAAACTTGGGCATTATAATCCTCACTACC
ATGGTTTCAATTTTGAGAAAAAGTATCCAGACCACACTAATAAATAGAAG
ATACAGGAATTACAAGATCTAAAAAGCACTCCGCTGAAAGAATATTTGCA
TCTTTTGACCAGACGAAGAGCTTCGCACGGGGGCCTCAAGTGGACTACAA
CCTTTATTATTTCTGCTCAACGGAGAAATGCAACCTATATCAAAAAGCTG
GTGAATAAACAAATTGTAGACAAAACCAATGAGGCAGCAAGGTACATGTC
AGTACGAGAGGGCTTCTTCATCAATTAGCTGCATCACGGCTGTAGTACTG
GTCAAGGGTCTTTCCTGGTATACGGTGGAGAAGCTCACGAGGAAAGATGC
GAAGAAGTGTCCATGCCAGATCAAGAGATTGGAAGATATTCCTAGAGTCA
TAAGCTCCTTGAGCAACAAATTTTCTCTCAAACTTGTCCAGGAACTCTAA
GTACAGCAGATCCTCAGAAGAAAGTGCTTCTTCTCCGACCACAGCCTTCA
TTGCCTGGACATCCTTCCCAATGGCATAATTTGCATACAGCTGGTTGGAA
ACATCGGAATGGTCCCTACGAGTCATCCCCTCACCAATAGCACTCTTCAT
CAGACGAGATAGGGACGGAAGGACATTGATCGGAGGATATATCTGTCTGT
TCTGGAGCTGCCCTGTCATGTAAATCTGCCCCTCGGTGATATATCCCCCT
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