CN189031

Overview
NameCN189031
Unique NameCN189031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2200 contig Csv1_Contig2200:12..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 75/187 (40.11%), Postives = 109/187 (58.29%), Query Frame = 3
Query:  123 ALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGA-VAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGL 677
            A ++++ S++K H                F++W+V+H K Y+ L E   R ++F  N R I+ HN+ N T+K+GLN+F+D++ +E R  +L +          S     YL   G   P S+DWRKKG  V+ VK+QGSCGSCW FST  A+E    I TG ++SL+EQ+LVDC  ++ N GC GGL
Sbjct:   22 ASNLAVSSFEKLH----------------FKSWMVQHQKKYS-LEEYHHRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSE-----PQNCSATKGNYLRGTGP-YPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGL 185          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 67/157 (42.68%), Postives = 95/157 (60.51%), Query Frame = 3
Query:  210 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGL 677
            F  + V++GK+Y +  E  +RF IF E+L  +   N +   Y++G+NRF+D++ EE+++  LGA      T      +  +L R   ALP++ DWR+ G V+ VK+Q  CGSCW FST  A+E      TG  ISLSEQ+LVDC   +N  GCNGGL
Sbjct:   61 FARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATL-----AGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDCAGGFNNFGCNGGL 212          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.017e-29
Identity = 79/205 (38.54%), Postives = 116/205 (56.59%), Query Frame = 3
Query:   84 MAMFLLFLFTVSSALDMSIVSYDKTHES----KSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRT---YKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEAL---PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC----DTSYN 656
            M   +L LF   S L +S  S   TH S      + + T  +V ++F+ W  +HG+ Y+   E+ KR EIFK N  +I + N+  ++   +++GLN+FAD+T +E+   +L A    K  S + K +N+ + +   +    P S DWRKKG + +VK QG CG  WAFS   A+E  + I TG L+SLSEQELVDC    + SYN
Sbjct:    1 MGFLVLLLF---SLLGLSSSSSISTHRSILDLDLTKFTTQKQVSSLFQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQA---PKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESEGSYN 199          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 74/174 (42.53%), Postives = 99/174 (56.90%), Query Frame = 3
Query:  192 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS----ENRTYKVGLNRFADLTNEEYRSM-----HLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMD 683
            D +   +  + ++H K Y    E+  R +IF EN   I +HN        +YK+GLN++AD+ + E++       H   +   +RT L       Y+P     +P SVDWR+ GAV  VKDQG CGSCWAFS+  A+EG +    G L+SLSEQ LVDC T Y N GCNGGLMD
Sbjct:   22 DLIKEEWHTYKLQHRKNYANEVEERFRMKIFNENRHKIAKHNQLFAQGKVSYKLGLNKYADMLHHEFKETMNGYNHTLRQLMRERTGLVGAT---YIPPAHVTVPKSVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTKYGNNGCNGGLMD 192          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 68/163 (41.72%), Postives = 98/163 (60.12%), Query Frame = 3
Query:  210 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY--NEGCNGGLM 680
            ++ W   +GK Y    E+  R  I+++NL+ +  HN E+     +Y++G+N   D+T+EE  S+       + R   +  R+  Y     + LPDS+DWR+KG V EVK QG+CGSCWAFS + A+E   K+ TG L+SLS Q LVDC T+   N+GCNGG M
Sbjct:   28 WDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEVISL-----MSSLRVPSQWPRNVTYKSDPNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGCNGGFM 185          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 72/171 (42.11%), Postives = 96/171 (56.14%), Query Frame = 3
Query:  189 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDY 686
            D    A +  W   H + Y    E+E R  I+++N+R I  HN E       + + +N F D+TNEE+R +  G R        K K+   +   +   +P SVDWR+KG V  VK+QG CGSCWAFS    +EG   + TG LISLSEQ LVDC  +  N+GCNGGLMD+
Sbjct:   22 DQTFSAEWHQWKSTHRRLYGT-NEEEWRRAIWEKNMRMIQLHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQ------KHKKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGLMDF 185          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.591e-29
Identity = 72/176 (40.91%), Postives = 102/176 (57.95%), Query Frame = 3
Query:  171 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMD 683
            S++ + D  + A +  W   H + Y  + E+  R  ++++N++ I+ HN E    K G    +N F D+TNEE+R +  G +      + K K+   +   +   +P SVDWR+KG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVDC  +  NEGCNGGLMD
Sbjct:   16 SAAPKFDQSLNAQWYQWKATHRRLYG-MNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQ------NQKHKKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMD 184          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 71/176 (40.34%), Postives = 102/176 (57.95%), Query Frame = 3
Query:  171 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMD 683
            S++ + D  + A +  W   H + Y  + E+E R  ++++N + ID HN E       +++ +N F D+TNEE+R +  G +      + K K+   +   +   +P SVDW KKG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVDC  +  N+GCNGGLMD
Sbjct:   16 SAAPKLDPNLDAHWHQWKATHRRLYG-MNEEEWRRAVWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFRQVMNGFQ------NQKHKKGKLFHEPLLVDVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMD 184          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 72/171 (42.11%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  189 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDY 686
            D    A +  W   H + Y    E+E R  ++++N+R I  HN E    K G    +N F D+TNEE+R +  G R        K K+   +   +   +P +VDWR+KG V  VK+QG CGSCWAFS    +EG   + TG LISLSEQ LVDC     N+GCNGGLMD+
Sbjct:   22 DQTFNAQWHQWKSTHRRLYGT-NEEEWRRAVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQ------KHKKGRLFQEPLMLQIPKTVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDF 185          
BLAST of CN189031 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 71/176 (40.34%), Postives = 102/176 (57.95%), Query Frame = 3
Query:  171 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMD 683
            S++ + D  + A +  W   H + Y  + E+E R  ++++N + ID HN E       +++ +N F D+TNEE+R +  G +      + K K+   +   +   +P SVDW KKG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVDC  +  N+GCNGGLMD
Sbjct:   16 SAAPKLDPNLDAHWHQWKATHRRLYG-MNEEEWRRAVWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFRQVMNGFQ------NQKHKKGKLFHEPLLVDVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMD 184          
The following BLAST results are available for this feature:
BLAST of CN189031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATH_PIG7.786e-3040.11Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
ALEU_HORVU7.786e-3042.68Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
P34_SOYBN1.017e-2938.54P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CATL_SARPE2.959e-2942.53Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CATS_BOVIN3.864e-2941.72Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATL1_MOUSE5.047e-2942.11Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATL1_CANFA6.591e-2940.91Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CATL2_BOVIN8.608e-2940.34Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_RAT8.608e-2942.11Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CATL1_BOVIN8.608e-2940.34Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001D08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189031 ID=CN189031; Name=CN189031; organism=Citrus sinensis; type=EST; length=688bp
GCGTTTTAAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAACCCTTCTTT
TCTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACT
TTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATG
ATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTT
ATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGC
TTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGT
TTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAAC
CGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGC
ACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTT
ATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAG
AAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTG
GGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAG
GTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCA
TATAATGAAGGATGTAATGGTGGTTTGATGGACTATGC
back to top