CN189028

Overview
NameCN189028
Unique NameCN189028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2087 contig Csv1_Contig2087:54..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189028 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = -1
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of CN189028 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CN189028 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = -1
Query:  233 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 601
            ++ K  +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L     GG
Sbjct:   37 VRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of CN189028 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = -1
Query:  233 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 601
            I  K G+P  QQRL      L+DG TL+   +   ST+ LV++     + I V+   G +   EV  + T+D +K K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLRGG
Sbjct:   32 IAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          
BLAST of CN189028 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
The following BLAST results are available for this feature:
BLAST of CN189028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
UBL1_SCHPO3.458e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST8.518e-1652.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UBD_HUMAN1.964e-1234.88Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
UCRP_MOUSE7.462e-1234.68Ubiquitin cross-reactive protein OS=Mus musculus G... [more]
ANUB1_HUMAN3.703e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189028 ID=CN189028; Name=CN189028; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTAACCACACAAGACAATTTATTCATGAATCAGAAA
ACCATAGCCTTATTAGAGGCCATTTCAGAGTACGACAACAGATAACAAAA
GCTTATTATAAGCATACCATAAAACAACATTTTGCAGCTTAATCTAAGTC
ATTAAGGCCACAAACGAAACAGAAAAAAGAAAGCAAACCCAAAGAACACA
GACACTGGCAGTGGACCAGAGTGCCATTAAAAACCACCACGCAGGCGAAG
GACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTAC
GCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGGA
GGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTC
TGAACTCTCAACCTCCAGGGTAATGGTTTTTCCCGTCAATGTCTTCACGA
AAATCTGCATTCCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCC
TTCTGAATGTTGTAATCTGCAAGGGTCCTCCCATCTTCAAGCTGCTTGCC
TGCAAAAATCAACCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGA
T
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