CN189027

Overview
NameCN189027
Unique NameCN189027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:189..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.767e-39
Identity = 75/119 (63.03%), Postives = 96/119 (80.67%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D  L TQL+  F  GK+L+ TV+ S GEE + A+K
Sbjct:   36 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.767e-39
Identity = 75/119 (63.03%), Postives = 96/119 (80.67%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D  L TQL+  F  GK+L+ TV+ S GEE + A+K
Sbjct:   36 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A2_SCHPO (Eukaryotic translation initiation factor 5A-2 OS=Schizosaccharomyces pombe GN=tif51b PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 71/120 (59.17%), Postives = 98/120 (81.67%), Query Frame = -3
Query:  260 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKD 619
            KGRPCK+V++STSKTGKHGHAK H V +DIF+G+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L  ++++GF EGKDL++TV+S+MGEE   A +D
Sbjct:   36 KGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFEEGKDLIITVVSAMGEEIALACRD 153          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_SCHPO (Eukaryotic translation initiation factor 5A-1 OS=Schizosaccharomyces pombe GN=tif51a PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.569e-36
Identity = 70/120 (58.33%), Postives = 98/120 (81.67%), Query Frame = -3
Query:  260 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKD 619
            KGRPCK+V++STSKTGKHGHAK H V +DIF+G+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L  ++++GF EG+DL++TV+S+MGEE   A +D
Sbjct:   36 KGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFDEGRDLIITVVSAMGEETALACRD 153          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.052e-35
Identity = 69/120 (57.50%), Postives = 99/120 (82.50%), Query Frame = -3
Query:  260 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKD 619
            K RPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN +VP+V+R ++QL+DI +DG++SL+T +G+TKDD+++P  E L  +L+  F EGKDL++T++S+MGEE   + K+
Sbjct:   34 KNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPNVSRQEFQLLDI-DDGYLSLMTADGDTKDDVKVPEGE-LGDKLQSEFDEGKDLIVTIISAMGEEAAISYKE 151          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            K RPCK+VE+STSKTGKHGHAK H VGIDIFS KK EDI PS+HN DVP+V R D QLI IS+D F++L+TE+G+ ++DL++P  E L  QL+  F  GKDL+ TV+ + GEE + A+K
Sbjct:   35 KSRPCKIVEMSTSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 71/125 (56.80%), Postives = 99/125 (79.20%), Query Frame = -3
Query:  245 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 619
            KGRPCK+V++STSKTGKHGHAK H V +DIF+GKKLED+ PS+HN +VP V R++YQL+DI +DG++SL+T +G TKDD++ P  E L   ++  F EGKDL++T++S+MGEE   + K+  P+S
Sbjct:   35 KGRPCKIVDMSTSKTGKHGHAKVHLVTLDIFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAPEGE-LGDSMQAAFDEGKDLMVTIISAMGEEAAISFKE-APRS 156          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A2_YEAST (Eukaryotic translation initiation factor 5A-2 OS=Saccharomyces cerevisiae GN=HYP2 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 70/120 (58.33%), Postives = 94/120 (78.33%), Query Frame = -3
Query:  260 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKD 619
            K RPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN +VP V R +YQL+DI +DGF+SL+  +G+TKDD++ P  E L   L+  F EGKDL++T++S+MGEE   + K+
Sbjct:   35 KSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEGE-LGDSLQTAFDEGKDLMVTIISAMGEEAAISFKE 152          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A2_PONAB (Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 70/119 (58.82%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +++  +  G+D+ ++VM +M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A2_MOUSE (Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 70/119 (58.82%), Postives = 92/119 (77.31%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +++  +  G+D+ ++VM +M EE   A+K
Sbjct:   34 KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
The following BLAST results are available for this feature:
BLAST of CN189027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IF5A_SPOFR5.767e-3963.03Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX5.767e-3963.03Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A2_SCHPO2.679e-3659.17Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_SCHPO4.569e-3658.33Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_CANAL5.052e-3557.50Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A_DROME8.617e-3560.50Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A1_YEAST1.125e-3456.80Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_YEAST2.507e-3458.33Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_PONAB1.244e-3358.82Eukaryotic translation initiation factor 5A-2 OS=P... [more]
IF5A2_MOUSE1.244e-3358.82Eukaryotic translation initiation factor 5A-2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189027 ID=CN189027; Name=CN189027; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTAAAATAACAACGACGATTTCTTTCTACCATTAT
AATTCATTAGAGAAATTGAACACCATAAAATTTTCCTCCGCCAATCAAAA
GAACTACATATTCCAGGCAGCTTGCAATTCTCACCACAAAACAAAGACGC
TACAAATATTAAAGGCAAACTCTAGATGATTAAAATATTTTTCCAAAAAA
CAGATGCAACCAGACACAGCAGATAATCACATATTGCGCAACTACGACTT
TGGGCCAATATCCTTGAGGGCACAGATCTGCTCCTCACCCATTGAAGACA
TGACAGTCAAAACCAAGTCCTTCCCCTCAGCAAAACCGTCCTTGAGCTGG
GTCAGCAGAGTCTCATCGGTTGGGAGCCTCAGATCATCCTTGGTGTTCCC
ATTTTCAGTCAGCAAACTCACAAATCCATCCTCAGAAATATCAATCAACT
GATAGTCGGTACGGTTGACATGGGGAACATCAGAGTTATGAGAAGAGGGG
ACAATATCTTCCAACTTCTTTCCACTGAAGATATCAATTCCAACAAAGTG
GCACTTAGCATGACCGTGCTTTCCAGTCTTGGAGGTGGAGACTTCCACAA
CCTTGCAGGGACGGCCTTTGA
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