CN189027

Overview
NameCN189027
Unique NameCN189027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:189..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.812e-28
Identity = 58/119 (48.74%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 619
            KG PCK+V++STSKTGKHGHAK +   IDIF+GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  ++     EGK+ +++V+S++G+E + ++K
Sbjct:   39 KGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.333e-27
Identity = 68/121 (56.20%), Postives = 87/121 (71.90%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGEEQICALK 619
            KGRPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  Q++D + + +  VL  V+S++GEE I   K
Sbjct:   38 KGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWK 156          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = -3
Query:  263 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGEEQICALK 619
            +GRPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P  + L   +++   + +  VL  V+++ GEE I   K
Sbjct:   38 RGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD-LGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: YE034_YEAST (Putative uncharacterized protein YEL034C-A OS=Saccharomyces cerevisiae GN=YEL034C-A PE=5 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  254 ANILEGTDLLLTH*RHDSQNQVLPLSKTVLELGQQSLIGWEPQIILGVPIFSQQTHKSILRNINQLIVGTVDMGNIRVMRRGDNIFQLLSTEDINSNKVALSMTVLSSLGGGDFHNL 604
            ++ LEG     TH   D  +QVL   K+ L+   Q    W   IIL V +   Q  ++++ N+ QL+  ++D  N  V+ R   IFQLL++EDIN N++  S+TVL+SL  G   NL
Sbjct:   27 SSFLEGDGGFFTHSGDDGNHQVLTFIKSSLQTVTQFTF-WSLDIILSVTVHVHQRQETVI-NVQQLVFVSLDNWNFHVVSRWRQIFQLLTSEDINGNQMDFSVTVLTSLRSGHVDNL 141          
BLAST of CN189027 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -3
Query:  335 GRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 616
            G PCKVVEV  SKTGKHG AK   VGI  F G K   +VP+    +VP + +   Q++    D  V L+     +  ++ +P +E + ++L +G
Sbjct:   21 GEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEG 113          
The following BLAST results are available for this feature:
BLAST of CN189027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IF5A_DICDI7.812e-2848.74Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A2_CAEEL1.333e-2756.20Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL2.778e-2552.89Eukaryotic translation initiation factor 5A-1 OS=C... [more]
YE034_YEAST4.601e-1237.61Putative uncharacterized protein YEL034C-A OS=Sacc... [more]
IF5A_THEPD8.677e-1137.23Translation initiation factor 5A OS=Thermofilum pe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189027 ID=CN189027; Name=CN189027; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTAAAATAACAACGACGATTTCTTTCTACCATTAT
AATTCATTAGAGAAATTGAACACCATAAAATTTTCCTCCGCCAATCAAAA
GAACTACATATTCCAGGCAGCTTGCAATTCTCACCACAAAACAAAGACGC
TACAAATATTAAAGGCAAACTCTAGATGATTAAAATATTTTTCCAAAAAA
CAGATGCAACCAGACACAGCAGATAATCACATATTGCGCAACTACGACTT
TGGGCCAATATCCTTGAGGGCACAGATCTGCTCCTCACCCATTGAAGACA
TGACAGTCAAAACCAAGTCCTTCCCCTCAGCAAAACCGTCCTTGAGCTGG
GTCAGCAGAGTCTCATCGGTTGGGAGCCTCAGATCATCCTTGGTGTTCCC
ATTTTCAGTCAGCAAACTCACAAATCCATCCTCAGAAATATCAATCAACT
GATAGTCGGTACGGTTGACATGGGGAACATCAGAGTTATGAGAAGAGGGG
ACAATATCTTCCAACTTCTTTCCACTGAAGATATCAATTCCAACAAAGTG
GCACTTAGCATGACCGTGCTTTCCAGTCTTGGAGGTGGAGACTTCCACAA
CCTTGCAGGGACGGCCTTTGA
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