CN182371

Overview
NameCN182371
Unique NameCN182371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.112e-74
Identity = 135/171 (78.95%), Postives = 151/171 (88.30%), Query Frame = -1
Query:  108 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 620
            GAAAVIVG+DPD + ERPL+++VS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEK+L+ AF+P+GI+DWNSIFWIAHPGGPAILDQV           +ATR VLSEYGNMSSACVLFI+DEMRKKS+E    TTGEGL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  221 GAAAVIVGSDPDLTTERPLFEMVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALTTAFSPLGINDWNSIFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFIIDEMRKKSSENGAGTTGEGLEWGVLFGFGPGLTVETVVLHSVP 391          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.478e-74
Identity = 137/170 (80.59%), Postives = 149/170 (87.65%), Query Frame = -1
Query:  111 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 620
            GAAA+IVGADP   VE+PL+++VST+QTILPDSDGAIDGHLREVG+TFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQV            ATR VLSEYGNMSSACVLFILDEMR+KSAE+   TTGEGLDWGVLFGFGPGLTVETVVLHS+
Sbjct:  218 GAAAIIVGADPLPEVEKPLFEVVSTAQTILPDSDGAIDGHLREVGVTFHLLKDVPGLISKNIEKSLVEAFQPLGISDWNSLFWIAHPGGPAILDQVEEKLALKPEKLGATRHVLSEYGNMSSACVLFILDEMRRKSAEKGLKTTGEGLDWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 5.521e-74
Identity = 135/170 (79.41%), Postives = 150/170 (88.24%), Query Frame = -1
Query:  111 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 620
            GAAAVI+GADP   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EA  P+GISDWNS+FWIAHPGGPAILDQV           +ATRQVLS+YGNMSSACVLFILDE+R+KSAE+   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:   61 GAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLNEALKPIGISDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRQVLSDYGNMSSACVLFILDEVRRKSAEKGLETTGEGLEWGVLFGFGPGLTVETVVLHSV 230          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 7.211e-74
Identity = 134/170 (78.82%), Postives = 149/170 (87.65%), Query Frame = -1
Query:  111 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 620
            GAAA+I+GADP   +E+P+++LVST+QTILPDSDG+IDGHLRE GLTFHLLKDVPGLISKNI+KSL+EAF P+GISDWNSIFWIAHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMRKKSAE+   T GEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  217 GAAAIIIGADPIPEIEKPMFELVSTAQTILPDSDGSIDGHLREAGLTFHLLKDVPGLISKNIQKSLTEAFKPLGISDWNSIFWIAHPGGPAILDQVEEKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAEDGLETAGEGLEWGVLFGFGPGLTVETVVLHSV 386          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 7.211e-74
Identity = 136/170 (80.00%), Postives = 149/170 (87.65%), Query Frame = -1
Query:  111 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 620
            GAAA+IVG+DP   VE+PL++LVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EAF P+GISDWNS+FWIAHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMRKKSA +   TTGEGL+WGVLFGFGPGLTVETVVLHS+
Sbjct:  218 GAAAIIVGSDPIPEVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLAEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAADGLKTTGEGLEWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 9.418e-74
Identity = 136/170 (80.00%), Postives = 150/170 (88.24%), Query Frame = -1
Query:  111 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 620
            GAAA+I+G+DP   VERPL++LVS +QT+LPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQV           +ATRQVLS+YGNMSSACVLFILDEMRK S++E  +TTGEGLDWGVLFGFGPGLTVETVVLHSV
Sbjct:  218 GAAAMIIGSDPLPEVERPLFELVSAAQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFQPLGISDWNSIFWIAHPGGPAILDQVELKLGLKPEKLQATRQVLSDYGNMSSACVLFILDEMRKASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS1_MAIZE (Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 9.418e-74
Identity = 136/172 (79.07%), Postives = 149/172 (86.63%), Query Frame = -1
Query:  105 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 620
            GAAA   GADPD  VERPL+QLVS +QTILPDS+GAIDGHLREVGL FHLLKDVPGLISKNIE++L +AF P+GISDWNSIFW+AHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMRK+ AE+ ++TTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  221 GAAAGRGGADPDGRVERPLFQLVSAAQTILPDSEGAIDGHLREVGLAFHLLKDVPGLISKNIERALEDAFEPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKARMRATRHVLSEYGNMSSACVLFILDEMRKRPAEDGQSTTGEGLDWGVLFGFGPGLTVETVVLHSVPI 392          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.606e-73
Identity = 134/173 (77.46%), Postives = 151/173 (87.28%), Query Frame = -1
Query:  105 GAAAVIVGADPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 620
            GAAA+IVG+DPD S  E+P++++VS +QTILPDSDGAIDGHLREVG+TFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILD V           +ATR VLSEYGNMSSACVLFILDEMR+KS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  222 GAAALIVGSDPDVSAGEKPIFEMVSAAQTILPDSDGAIDGHLREVGITFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSLDDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 394          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.098e-73
Identity = 133/172 (77.33%), Postives = 150/172 (87.21%), Query Frame = -1
Query:  105 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 620
            GAAA+I+G+DP   VE+PL++LVS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKN+EKSL+EAF P+GISDWNS+FWIAHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMR+KS E+   TTGEG++WGVLFGFGPGLTVETVVLHSV I
Sbjct:  218 GAAAIIIGSDPIPEVEKPLFELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLSLKPEKLRATRHVLSEYGNMSSACVLFILDEMRRKSKEDGLKTTGEGIEWGVLFGFGPGLTVETVVLHSVAI 389          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 3.579e-73
Identity = 135/170 (79.41%), Postives = 148/170 (87.06%), Query Frame = -1
Query:  111 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 620
            GAAA+I+G+DP   VERPL++LVS SQT+LPDS+GAIDGHLREVGLTFHLLKDVPGLISKNI+KSL EAF P+GISDWNSIFWIAHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMRK S++E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  218 GAAAIIIGSDPLPGVERPLFELVSASQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIQKSLVEAFQPLGISDWNSIFWIAHPGGPAILDQVELKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
The following BLAST results are available for this feature:
BLAST of CN182371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS1_GERHY1.112e-7478.95Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHS1_CASGL2.478e-7480.59Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHSY_MALDO5.521e-7479.41Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
CHS1_CITSI7.211e-7478.82Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS1_CAMSI7.211e-7480.00Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHS2_SOLTU9.418e-7480.00Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]
CHS1_MAIZE9.418e-7479.07Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV... [more]
CHSY_RAPSA1.606e-7377.46Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]
CHSY_HYPAN2.098e-7377.33Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]
CHSJ_PETHY3.579e-7379.41Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002F16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182371 ID=CN182371; Name=CN182371; organism=Citrus sinensis; type=EST; length=620bp
AAACTAAACCTTCACACGATCAACCAATAATTCAAGAGTGAAAGCATACA
ACATAAAGTTACTGAACTACTAAACATACTGATGGAGTTCTCACTTCAAG
CTTTGATGGGGACACTGTGCAGCACAACGGTCTCGACGGTGAGCCCCGGC
CCGAACCCGAACAGCACACCCCAATCTAGCCCTTCGCCGGTGGTGGCTTT
CGCTTCCTCAGCAGACTTCTTTCTCATCTCGTCAAGGATGAACAGGACAC
AAGCGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTGGCCTTC
AGCTTCTCCTCTTTGAGGCCGAGTTTAGACTCCACTTGGTCCAGAATTGC
GGGCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCAGTCGCTGATGC
CAACCGGGGCGAACGCTTCCGACAGGCTTTTCTCTATATTCTTTGAGATC
AAGCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTCGCGCAA
GTGTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCGAAGTCG
ACACAAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCGGCACCC
ACGATCACAGCAGCAGCACC
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