EY666139

Overview
NameEY666139
Unique NameEY666139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.524e-23
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 249
            RKW          K LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct:  362 RKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.297e-23
Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 249
            RKW            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct:  362 RKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.791e-22
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 246
            RKW            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct:  362 RKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.121e-22
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSG 240
            RKW          + L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct:  357 RKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 177
            RKW          ++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  355 RKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
The following BLAST results are available for this feature:
BLAST of EY666139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_PHAVU2.524e-2365.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.297e-2365.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.791e-2265.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN8.121e-2264.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.813e-1363.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-014-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666139 ID=EY666139; Name=EY666139; organism=Citrus sinensis; type=EST; length=535bp
CCACGCGTCCGGAGGAAGTGGATCTCTGGTGTTGGTGTTGGAAGCATTGG
CAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAA
GGATGACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCAAGAG
CAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTGAGGC
CGCTCTTGGTGAAGCTAATGAAGATGCTATTCAGAGTGGAAATTTCTATG
GTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGCAAAGCAGC
CCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTACTGCAG
AAAACTTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAATACACG
CTTTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCTTAGGAT
GTGAGATATTCAAATAATATTGTTGCATTTTCATTTCTTTTTTANAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG
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