CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:54..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++++G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_DESDG (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEV+AVG GKT    K + ++VK G  V+++KYAGTE++L+G +HL++REDD++ I++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVKLDGVDHLVMREDDILAIIQ 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.412e-21
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++ +G  +LIL+E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.412e-21
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++ +G  +LIL+E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++L    +++L E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++L    +++L E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++L+G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++L+G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_DESDA (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 48/94 (51.06%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKT--KLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KPL DRVLVK    EEKT GG+++P TA+ KP  G+VVAVG GK VG    +  ++VK G +V+++KYAGTE++L+G +HL++RE+D++ I++
Sbjct:    3 LKPLNDRVLVKRLETEEKTAGGLYIPDTAKEKPSKGQVVAVGPGK-VGDNGERTALAVKAGDEVLFNKYAGTEVKLDGVDHLVMREEDILAIID 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_MYXXD (10 kDa chaperonin OS=Myxococcus xanthus (strain DK 1622) GN=groS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 47/93 (50.54%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            I+PL DR++VK    E KT GG+F+P TA+ KP  G+V+AVG GK     K+  + +K G  +++SKYAGTE++L+G  HLILRE+DV+G++E
Sbjct:    3 IRPLQDRLIVKRVAEENKTKGGLFIPDTAKEKPLEGKVIAVGNGKVQEDGKVRPLDIKAGDTILFSKYAGTEIKLDGEEHLILREEDVLGVIE 95          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_DESVH2.845e-2253.1910 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESDG4.852e-2252.1310 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_DESHY1.412e-2153.2610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_DESHD1.412e-2153.2610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_SYNJB1.844e-2154.7410 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA1.844e-2154.7410 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]
CH10_LAWIP2.408e-2152.6910 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH10_LAWIN2.408e-2152.6910 kDa chaperonin OS=Lawsonia intracellularis GN=g... [more]
CH10_DESDA9.151e-2151.0610 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_MYXXD1.561e-2050.5410 kDa chaperonin OS=Myxococcus xanthus (strain DK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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