CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CUPTR (10 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++++G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVV 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_ALCBS (10 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            SI+PL DRVLV+ +  E K+ GGI LP +A  KP  GEV+AVG GK T       + VK G  VI+ +Y+G+ +++ G   LI+ E +++ ++E
Sbjct:    2 SIRPLHDRVLVRREEEETKSAGGIVLPGSAAEKPSRGEVIAVGNGKITENGDVRPLDVKAGDTVIFGQYSGSTVKVEGEELLIMSEAEILAVVE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_WOLPM (10 kDa chaperonin OS=Wolbachia pipientis wMel GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E N    ++++E D++ +++
Sbjct:    5 SLNVLDDSVL--IKPISEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERVTLTVKAGDKVFYRQWAGTEIEHNNEKLIVMKESDILAVIK 96          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_THEYD (10 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVE-EKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            IKPL DRV+VK  + E EKT GGI++P  A+ KPQ G VV +G             VK G  V++ KYAG++++++   +LI++E++++GI+E
Sbjct:    3 IKPLKDRVVVKFSSEELEKTPGGIYVPDVAKEKPQKGTVVEIGSEVK--------EVKVGDTVLFDKYAGSKIKVDDVEYLIIKEEEILGIVE 87          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_POLNA (10 kDa chaperonin OS=Polaromonas naphthalenivorans (strain CJ2) GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++++G   L+++E+D+  ++E
Sbjct:    2 NLRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGELGAMAVKVGDRVLFGKYSGQTVKVDGDELLVMKEEDLFAVVE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CORGL (10 kDa chaperonin OS=Corynebacterium glutamicum GN=groS PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 36/94 (38.30%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +IKPL D++LV+I   E  T  G+ +P +A+ KPQ   V+AVG G+   K  ++ + +K    VI+S+Y GTE++  G  +L+L   D++ I+E
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDDKGNRIPLDIKEDDVVIFSRYGGTEIKFGGVEYLLLSARDILAIVE 98          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CORGB (10 kDa chaperonin OS=Corynebacterium glutamicum (strain R) GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 36/94 (38.30%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +IKPL D++LV+I   E  T  G+ +P +A+ KPQ   V+AVG G+   K  ++ + +K    VI+S+Y GTE++  G  +L+L   D++ I+E
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDDKGNRIPLDIKEDDVVIFSRYGGTEIKFGGVEYLLLSARDILAIVE 98          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_WOLWR (10 kDa chaperonin OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E N    ++++E D++ +++
Sbjct:    5 SLNVLDDSVL--IKPISEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERVTLTVKAGDKVFYRQWAGTEIEHNDEKLIVMKESDILAVIK 96          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_RHOFD (10 kDa chaperonin OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K ++  ++VK G +V++ KY+G  +++ G   L+++EDD+  ++E
Sbjct:    3 LRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGEISPMAVKVGDRVLFGKYSGQTVKVAGDELLVMKEDDLFAVVE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_FINM2 (10 kDa chaperonin OS=Finegoldia magna (strain ATCC 29328) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 39/94 (41.49%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  247 SIKPLGDR-VLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++KP+GDR VL K +  EEKT  GI LPS+A+  P   EV+A+G  +     K+  ++K G +VIYSKYAGTE++L   ++++++ +D++ ++E
Sbjct:    2 NLKPIGDRLVLKKQEKEEEKTFSGIVLPSSAKEAPVYAEVLAIGS-EVEEDEKMKGNIKVGDKVIYSKYAGTEIKLEDTDYILVKYEDILAVVE 94          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_CUPTR1.848e-1339.7810 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]
CH10_ALCBS1.848e-1342.5510 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]
CH10_WOLPM2.414e-1339.3610 kDa chaperonin OS=Wolbachia pipientis wMel GN=g... [more]
CH10_THEYD2.414e-1341.9410 kDa chaperonin OS=Thermodesulfovibrio yellowsto... [more]
CH10_POLNA2.414e-1340.4310 kDa chaperonin OS=Polaromonas naphthalenivorans... [more]
CH10_CORGL2.414e-1338.3010 kDa chaperonin OS=Corynebacterium glutamicum GN... [more]
CH10_CORGB2.414e-1338.3010 kDa chaperonin OS=Corynebacterium glutamicum (s... [more]
CH10_WOLWR3.152e-1339.3610 kDa chaperonin OS=Wolbachia sp. subsp. Drosophi... [more]
CH10_RHOFD3.152e-1340.8610 kDa chaperonin OS=Rhodoferax ferrireducens (str... [more]
CH10_FINM23.152e-1341.4910 kDa chaperonin OS=Finegoldia magna (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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