CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_COREF (10 kDa chaperonin OS=Corynebacterium efficiens GN=groS PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 36/94 (38.30%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +IKPL D++LV+I   E  T  G+ +P +A+ KPQ   V+AVG G+   K  ++ + +K    VI+S+Y GTE++ +G  +L+L   D++ I+E
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDEKGERIPLDIKEDDVVIFSRYGGTEIKFDGVEYLLLSARDILAIVE 98          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAW (10 kDa chaperonin OS=Staphylococcus aureus (strain MW2) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAU (10 kDa chaperonin OS=Staphylococcus aureus GN=groS PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAT (10 kDa chaperonin OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAS (10 kDa chaperonin OS=Staphylococcus aureus (strain MSSA476) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAR (10 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAN (10 kDa chaperonin OS=Staphylococcus aureus (strain N315) GN=groS PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAM (10 kDa chaperonin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=groS PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAE (10 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAAC (10 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_COREF3.152e-1338.3010 kDa chaperonin OS=Corynebacterium efficiens GN=... [more]
CH10_STAAW4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAU4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus GN=groS... [more]
CH10_STAAT4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAS4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAR4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAN4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAM4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAE4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAC4.117e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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