CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAES (10 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 34/93 (36.56%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G ++AVG+G+ +   T++   V  G  +++ +YAGTE++     +LIL E+D++ I+E
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKTYLILNEEDILAIIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAEQ (10 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 34/93 (36.56%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G ++AVG+G+ +   T++   V  G  +++ +YAGTE++     +LIL E+D++ I+E
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKTYLILNEEDILAIIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_VESOH (10 kDa chaperonin OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 38/96 (39.58%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKT-KLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +I+PL DRV+V+    ++ T  G+ +P +A  KP  G VVAVG GK    G T  LD+++  G +V++++YAGTE++++G   LI++E D+V +++
Sbjct:    2 NIRPLHDRVVVRRVEEKKTTSSGLIIPDSATEKPSEGVVVAVGNGKKNDNGDTIALDVTI--GNKVLFAQYAGTEIKVDGKKLLIMKEGDIVAVIK 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_THEAB (10 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  256 PLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            PLG R+L+K    E++T+GGI LP TA+ KP   E+VAVG  +       D+ +  G +VI+SKY+GTE+++   +++I+  +D++  +E
Sbjct:    5 PLGSRLLIKPIQEEKRTEGGIVLPDTAKEKPMKAEIVAVGNLEDA-----DVDLHVGDKVIFSKYSGTEIKIEEEDYIIIDVEDILAKIE 89          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CHLTB (10 kDa chaperonin OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            IKPLGDR+LVK +       GGI LP TA+ K    EVVA+G GK   K  +L   V+ G  V+  KY+G EL + G  ++I++  +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVVALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CHLT2 (10 kDa chaperonin OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            IKPLGDR+LVK +       GGI LP TA+ K    EVVA+G GK   K  +L   V+ G  V+  KY+G EL + G  ++I++  +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVVALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_WOLSU (10 kDa chaperonin OS=Wolinella succinogenes GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            + KPLG RVLV+    + KT  GI +P  A+ KP  G V A+ E   V K  L   +K G+QV+++KY+GT+++L G  +LIL+ +D++G +E
Sbjct:    2 NFKPLGQRVLVERLEEDTKTASGIIIPDNAKEKPLMGTVKALSE--EVAKEGL---LKAGSQVVFAKYSGTDVKLEGKEYLILKVEDLLGTIE 89          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_VEREI (10 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +++PL DRV+VK    E  T  GI +P  A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++++    L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVKVHRDELLVMKEDDLFAVVE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_PSEMY (10 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 35/94 (37.23%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LELNGANHLILREDDVVGILE 525
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG GK +   ++  ++VK G +V++  Y+G+  ++++G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNQGEVVAVGTGKVLENGEVRPLAVKVGDKVVFGPYSGSNTVKVDGEDLLVMGENEILAVIE 96          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_OLEAN (10 kDa chaperonin OS=Oleispira antarctica GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAG-TELELNGANHLILREDDVVGILE 525
            I+PL DR++V+ K  E  T GGI LP  A  KP  G V++VG G+ +    +  ++V  G  V++ KY+G   ++++G   LIL E D+ G+LE
Sbjct:    3 IRPLHDRIVVRRKEEETATAGGIILPGAAAEKPNQGVVISVGTGRILDNGSVQALAVNEGDVVVFGKYSGQNTIDIDGEELLILNESDIYGVLE 96          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_STAES2.043e-1236.5610 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH10_STAEQ2.043e-1236.5610 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH10_VESOH2.669e-1239.5810 kDa chaperonin OS=Vesicomyosocius okutanii subs... [more]
CH10_THEAB2.669e-1238.8910 kDa chaperonin OS=Thermosipho africanus (strain... [more]
CH10_CHLTB2.669e-1241.9410 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH10_CHLT22.669e-1241.9410 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH10_WOLSU3.485e-1241.9410 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH10_VEREI4.552e-1239.3610 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH10_PSEMY4.552e-1237.2310 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH10_OLEAN4.552e-1239.3610 kDa chaperonin OS=Oleispira antarctica GN=groS ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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