CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:54..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_DESPS (10 kDa chaperonin OS=Desulfotalea psychrophila GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            I+PL DR+LVK    EEKT GGI +P +A+ KP  G+VVAVG GK      ++ + VK G  V++SKY GT+++L+G + LI+REDD++GI+E
Sbjct:    3 IRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVKLDGEDFLIMREDDILGIME 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 46/92 (50.00%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            IKPLGDRV+++I   EEKT  GI LP TA+ KPQ G+VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++ +G  +LILRE D++ ++
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_TREDE (10 kDa chaperonin OS=Treponema denticola GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KPLGDRVLVK   VE KT GGI +P TAQ K Q G VVAVG+     K K+ +SV  G +VI+ KYAGT+++++G +HLIL+ +D+V ++E
Sbjct:    3 VKPLGDRVLVKPDAVETKTAGGIIIPDTAQEKTQRGVVVAVGD----DKEKIKVSV--GQKVIHDKYAGTQIQIDGVDHLILKSNDLVAVVE 88          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_PELPD (10 kDa chaperonin OS=Pelobacter propionicus (strain DSM 2379) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++PL DR+LVK    E KT GG+F+P TA+ KPQ GEVVA G GK     K L + VK G +V++ KY+GTE++++G + L++REDD++ ++E
Sbjct:    3 LRPLHDRILVKRVEEETKTAGGLFIPETAKEKPQRGEVVAAGNGKKTEDGKVLPLDVKVGDKVLFGKYSGTEVKVDGEDFLMMREDDILAVVE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_LACPL (10 kDa chaperonin OS=Lactobacillus plantarum GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 46/91 (50.55%), Postives = 68/91 (74.73%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGI 519
            +KPLGDRV+++ +  EE+T GGI + + A+ KPQ+G+VVAV +G+ +   TK+D SVK G QV++ KYAGTE++  GA +L+L E D+V I
Sbjct:    2 LKPLGDRVILQQQEEEEQTIGGIVIANNAKEKPQSGKVVAVNDGRVLDNGTKVDPSVKVGDQVLFDKYAGTEVKYQGAKYLVLHEKDIVAI 92          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOK5 (10 kDa chaperonin OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            I+PLGDRV++K    EE T  GI LP +A+ KPQ  E+VAVG G  +   ++ + VK G +V++SKYAG E++++G  + ILR+DD++ I+E
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGVIDGKEIKMEVKVGDRVLFSKYAGNEVKIDGVEYTILRQDDILAIIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOK1 (10 kDa chaperonin OS=Clostridium kluyveri (strain NBRC 12016) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            I+PLGDRV++K    EE T  GI LP +A+ KPQ  E+VAVG G  +   ++ + VK G +V++SKYAG E++++G  + ILR+DD++ I+E
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGVIDGKEIKMEVKVGDRVLFSKYAGNEVKIDGVEYTILRQDDILAIIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_RUBXD (10 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  253 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            KPLG+R LVK+   EEKT  GI LP TA+ KPQ  EV+AVG+ +       DI VK G  V+++KY+GTE+ LNG +++IL  DD++G++E
Sbjct:    4 KPLGERALVKLVEREEKTASGIVLPDTAKEKPQTAEVIAVGDSE-------DIKVKEGDVVVFAKYSGTEISLNGDDYMILDADDILGVVE 87          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACCN (10 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G ++I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDRIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_PELLD (10 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + L + VK G +V+Y KY+GTE+ + G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLAMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_DESPS3.845e-1950.5410 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]
CH10_BACTR3.845e-1950.0010 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH10_TREDE5.021e-1953.2610 kDa chaperonin OS=Treponema denticola GN=groS P... [more]
CH10_PELPD6.558e-1948.3910 kDa chaperonin OS=Pelobacter propionicus (strai... [more]
CH10_LACPL6.558e-1950.5510 kDa chaperonin OS=Lactobacillus plantarum GN=gr... [more]
CH10_CLOK56.558e-1946.7410 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH10_CLOK16.558e-1946.7410 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH10_RUBXD8.565e-1950.5510 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH10_BACCN8.565e-1946.7410 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]
CH10_PELLD1.119e-1849.4610 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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