CN189011

Overview
NameCN189011
Unique NameCN189011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 74/147 (50.34%), Postives = 93/147 (63.27%), Query Frame = -1
Query:  257 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 667
            QR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:  108 QRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 62/140 (44.29%), Postives = 86/140 (61.43%), Query Frame = -1
Query:  260 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNYMQGWL 667
            QRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +L E    +     P+ +         +  GD FF    L C   LQIGY  A  D ++  T+  +++ + QGW+
Sbjct:  105 QRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE----SCASFRPNWD--------VRQPGDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19
Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = -1
Query:  263 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--------CGYGLKPAQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 667
            QRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +L    + ++     + +D         G  +  AQP  D     ++CEPTLQIGY      + A+P S    G   NN++ GW
Sbjct:  106 QRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEA--EADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = -1
Query:  326 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 667
            Q +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  107 QTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = -1
Query:  326 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 667
            Q +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  107 QTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  260 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVN--TLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 667
            QR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +L +EG   N   +Q    A+        A  Q      A++ EPTLQIGY     PA+  ++        + NN+M GW+
Sbjct:  104 QRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = -1
Query:  329 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 667
            Q +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++       S        +P   QG    H  + + +LQIGY
Sbjct:  103 QTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = -1
Query:  329 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 667
            Q +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++       S        +P   QG    H  + + +LQIGY
Sbjct:  103 QTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = -1
Query:  260 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----------GYQVNTLQLNPSAEDCGYGLKPAQP--QGDTFFHALECEPTLQI----GYQPADPISVVTAGPSLNNYMQGWL 667
            Q SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++L +          G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +  GW+
Sbjct:  106 QHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = -1
Query:  314 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYG-------LKPAQPQGDTFFHALECEPTLQIGYQPADP 667
            Q+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++L E          P   +C  G            PQ + FF AL     + +   PA P
Sbjct:  106 QQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQALGLH-AVDVNQPPAPP 229          
The following BLAST results are available for this feature:
BLAST of CN189011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
MADS8_ORYSJ6.465e-2650.34MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA1.141e-2244.29MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MAD17_ORYSJ1.542e-1939.60MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS5_ORYSJ4.487e-1945.61MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI4.487e-1945.61MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS6_ORYSJ1.105e-1739.73MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MADS1_ORYSJ7.164e-1742.86MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI7.164e-1742.86MADS-box transcription factor 1 OS=Oryza sativa su... [more]
AGL3_ARATH7.921e-1634.87Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD34_ORYSJ1.765e-1541.60MADS-box transcription factor 34 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189011 ID=CN189011; Name=CN189011; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTATTCTCAACAGGCTTTGTTAAATAAAGATAAGCGCGNGTGA
TTGAAAATACACGCACACACAACATAGCTATATATCGTCATCAGTTTCCC
TAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTATGATTGCG
TGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTTGCTG
ATTCTTATGGATCAACTGCAATACATTGACTGGTAATGCCCGCCGCTCTC
TTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCTGCTG
TGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGTGGGT
TCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGTTGAGCTGGTTT
AAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTGTTCA
CTTGGTATCCCTCCATCAACCTTTGTTTGAGGGTCTTATTTGCTTCGCTC
AGCAACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTG
AGTTCTTGTTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAA
GTGACTCAAGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGA
TTCCTTTGGGATCTCTG
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