CN189011

Overview
NameCN189011
Unique NameCN189011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  293 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 667
            Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:  106 QKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  293 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 667
            Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:  106 QKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 54/149 (36.24%), Postives = 81/149 (54.36%), Query Frame = -1
Query:  260 RSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVNTLQ---LNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLN--------NYMQGWL 664
            R+ RNLLGE+LG +  KEL++LERQL+ +L   R  +TQ M++ + +L+ KE+ L + NK LK +   EG+   T Q    N +A   G       P   +  + L+C  EP LQIG+Q      V   G S++        N++QGW+
Sbjct:  105 RTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQDLWANSAASVAGDPNNSEFPVEPSHPNVLDCNTEPFLQIGFQ--QHYYVQGEGSSVSKSNVAGETNFVQGWV 251          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  305 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNP-SAEDCGYGLKPAQPQGD---TFFHALECEPTLQIG--YQPADPISV 667
            +R+QR+ LGE+L  ++SKEL++LE+QLD +LK IRS + Q M D++ ELQ KE+ + E N  L +++ E  ++   Q      ++ G+ + P  P       +  + +  P L +G  YQ  DP+ +
Sbjct:  106 ERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNHGHNMPPPPPPQQIQHPYMLSHQPSPFLNMGGLYQEEDPMEM 232          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  317 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL------KQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH------ALECEPTLQIG--YQPAD 667
            +R+QR+ LGEEL P++ K+L++LE+QL+ +LK IRS + Q M ++L  LQ KE+ + E N  L      ++ ++   Q    QLN S +D         PQ   F H      A +  P L +G  YQ  D
Sbjct:  108 ERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLNRSVDDV--------PQPQPFQHPHLYMIAHQTSPFLNMGGLYQEED 230          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 41/129 (31.78%), Postives = 74/129 (57.36%), Query Frame = -1
Query:  305 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNP-SAEDCGYGLKPAQPQGD-----TFFHALECEPTLQIG--YQPADPISV 667
            +R+QR+ LGE+L  ++ KEL++LE+QLD +LK IR+ + Q M +++ ELQ KE+ + E N  L +++ E  ++   Q      ++ G+ + P  P         +  + +  P L +G  YQ  DP+++
Sbjct:  106 ERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQGHNMPPPLPPQQHQIQHPYMLSHQPSPFLNMGGLYQEDDPMAM 234          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  416 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 667
            Q+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:  106 QKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  416 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 667
            Q+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:  106 QKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = -1
Query:  461 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 667
            Q+  ++L+GE+L  LN KEL+ LE+QL+ SLK I S ++  ML++++ELQ KE+ L E NK L++ L+E
Sbjct:  106 QKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVE 174          
The following BLAST results are available for this feature:
BLAST of CN189011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
MAD14_ORYSJ1.951e-1439.06MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI1.951e-1439.06MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL6_ARATH7.414e-1436.24Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AP1_SINAL4.806e-1334.65Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
CAL_ARATH2.019e-1135.88Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AP1_ARATH2.019e-1131.78Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD18_ORYSJ3.444e-1141.67MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI3.444e-1141.67MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD15_ORYSJ5.874e-1147.83MADS-box transcription factor 15 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189011 ID=CN189011; Name=CN189011; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTATTCTCAACAGGCTTTGTTAAATAAAGATAAGCGCGNGTGA
TTGAAAATACACGCACACACAACATAGCTATATATCGTCATCAGTTTCCC
TAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTATGATTGCG
TGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTTGCTG
ATTCTTATGGATCAACTGCAATACATTGACTGGTAATGCCCGCCGCTCTC
TTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCTGCTG
TGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGTGGGT
TCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGTTGAGCTGGTTT
AAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTGTTCA
CTTGGTATCCCTCCATCAACCTTTGTTTGAGGGTCTTATTTGCTTCGCTC
AGCAACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTG
AGTTCTTGTTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAA
GTGACTCAAGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGA
TTCCTTTGGGATCTCTG
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