CN182350

Overview
NameCN182350
Unique NameCN182350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = -1
Query:  344 GFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 751
            GFNV+ V  KD+KRG VA  S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A + +EL +KID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P LGRFA+RDM +TV VGV+  V+ K
Sbjct:  296 GFNVRGVEKKDIKRGDVAG-SLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.743e-32
Identity = 64/139 (46.04%), Postives = 95/139 (68.35%), Query Frame = -1
Query:  341 GFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 751
            GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ S++K +
Sbjct:  290 GFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.743e-32
Identity = 66/134 (49.25%), Postives = 95/134 (70.90%), Query Frame = -1
Query:  350 GFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            GFNV+ +  KD+KRG V  ++ + P   A  FT++VI++ HP  +  GY PV+  HT+ IA + SE+V ++D ++GKE EK P+F+K G++ +VK  P KP+ VE FSD+PPLGRFA+RDM +TV VGVI  V+
Sbjct:  296 GFNVRGIDKKDVKRGDVVGHTTNPPT-VAEEFTARVIVVWHPTALAVGYTPVVHVHTASIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDVK 428          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.501e-32
Identity = 64/139 (46.04%), Postives = 95/139 (68.35%), Query Frame = -1
Query:  341 GFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 751
            GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ S++K +
Sbjct:  290 GFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.279e-31
Identity = 65/136 (47.79%), Postives = 91/136 (66.91%), Query Frame = -1
Query:  344 GFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 751
            GFNV+ +   D++RG V   S D+P   A  FT+Q++++ HP  I  GY PV  CHT+  A  F+ELV K+D R+G+ LE+ P FLK GDA ++K  PTKP+ +E   ++P LGRFA+RDM QT+A G+  +V KK
Sbjct:  288 GFNVRGIGKDDVRRGDVCGAS-DNPPAVAEEFTAQIVVLQHPSAITVGYTPVFHCHTAQTACTFTELVKKLDPRTGQTLEENPTFLKAGDAAIIKCHPTKPLCLENAKEFPQLGRFAIRDMGQTIAAGMCINVVKK 422          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 64/139 (46.04%), Postives = 95/139 (68.35%), Query Frame = -1
Query:  341 GFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 751
            GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ S++K D
Sbjct:  290 GFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 65/137 (47.45%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  341 GFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 751
            GFNV+ V+ KD+KRG V  +  D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A  F EL+ K+D R+G+ +E+ P+FLK GDA +VK+ PTKPMV+E   + P LGRFA+RDM  T+A G+   V+ K+
Sbjct:  292 GFNVRGVSKKDIKRGDVCGHP-DNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVKAKN 427          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 66/134 (49.25%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  350 GFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 751
            GFNVK V  KD+KRG VA  S D P   A  FT+++++M HP  I  GY PV+  HT+ +A + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  298 GFNVKGVEKKDIKRGDVAG-SLDVPPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.850e-31
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = -1
Query:  344 GFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 751
            GFNV+ V  KD+KRG VA  S  +P   A  FT+QVI++ HP  +G GY PVL  HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI  V+ +
Sbjct:  296 GFNVRGVEKKDVKRGDVAG-SVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPR 430          
BLAST of CN182350 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.723e-31
Identity = 67/140 (47.86%), Postives = 91/140 (65.00%), Query Frame = -1
Query:  341 GFNVKNVAVKDLKRGFVASNSKDDPAREAA---NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 751
            GFNVK V   D+ RG VA +  D+PA        F +Q++++ HP  I  GY PV  CHT+ +A KF EL+ KID  +G+ +E+ P FLK G+A  V++ PTKPMV+E  S  P LGRFA+RDM QTVA G+   +EK++
Sbjct:  285 GFNVKGVGKNDISRGDVACHP-DEPATVVTPDDTFIAQIVVLQHPSAITAGYTPVFHCHTAQVACKFEELIEKIDPATGEVIEENPDFLKTGEAAKVRIRPTKPMVIEEVSFIPQLGRFAIRDMGQTVAAGMCVKIEKEE 423          
The following BLAST results are available for this feature:
BLAST of CN182350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_SULTO3.367e-3250.74Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_THEON5.743e-3246.04Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_METS55.743e-3249.25Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_THECE7.501e-3246.04Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_METHJ1.279e-3147.79Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_PYRKO1.671e-3146.04Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_METJA1.671e-3147.45Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_DESMO1.671e-3149.25Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_SULAC2.850e-3150.74Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METKA3.723e-3147.86Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002F02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182350 ID=CN182350; Name=CN182350; organism=Citrus sinensis; type=EST; length=751bp
CAAGAGCTTAAATGAGCTTCCAAATGTATTAAAACCACCAACTTTGACAT
CCAGCAGCTGGTCTATAAACTTCACACGTCAATTTAGTGCTATTAACCAA
ATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTTAAGCAGAAAG
ATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAAATAGGGCGGT
TTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAATAAAAAAAGA
CAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAAATTTCTCATT
TCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGGATCCTTCTTC
TCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCATGTCCCTAAC
AGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCAACAACCATGG
GCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATTCTTCAAGAAC
TTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCAC
GAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTG
GGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACCTGT
GAGGTGAAGTTGGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGC
AACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAAC
C
back to top