CN189003

Overview
NameCN189003
Unique NameCN189003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig121 contig Csv1_Contig121:353..1184. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189003 vs. ExPASy Swiss-Prot
Match: FRIL_BOVIN (Ferritin light chain OS=Bos taurus GN=FTL PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = -1
Query:  353 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 832
            EAA+N  +N++   SY Y +L  YFDRD++AL G+                  ++ QN RGG+     + +P  +    E G    AME AL +EK  N+ LL LH +A    DP + +F+E+ FL E+V+ I K+  +++ LR +     G G + F+++ L
Sbjct:   14 EAAVNRLVNMQLRASYTYLSLGFYFDRDDVALEGVGHFFRELAKEKREGAERLLKLQNQRGGRALFLDVQKPSQD----EWGKTQDAMEAALLVEKNLNQALLDLHGLASARGDPHICDFLENHFLDEEVKLIKKMGDHLTNLRRLAGPQAGLGEYLFERLTL 172          
BLAST of CN189003 vs. ExPASy Swiss-Prot
Match: FRIL_PONAB (Ferritin light chain OS=Pongo abelii GN=FTL PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.128e-18
Identity = 53/163 (32.52%), Postives = 87/163 (53.37%), Query Frame = -1
Query:  353 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 832
            EAA+N  +N+    SY Y +L  YFDRD++AL G+                  ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL LH++   + DP + +F+E+ FL E+V+ I K+  +++ L  +G    G G + F+++ L
Sbjct:   14 EAAVNSLVNMYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSAHTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 172          
BLAST of CN189003 vs. ExPASy Swiss-Prot
Match: FRIL_HUMAN (Ferritin light chain OS=Homo sapiens GN=FTL PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.473e-18
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = -1
Query:  353 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 832
            EAA+N  +N+    SY Y +L  YFDRD++AL G+                  ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL LH++     DP + +F+E+ FL E+V+ I K+  +++ L  +G    G G + F+++ L
Sbjct:   14 EAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 172          
BLAST of CN189003 vs. ExPASy Swiss-Prot
Match: FRIL_FELCA (Ferritin light chain OS=Felis catus GN=FTL PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.473e-18
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = -1
Query:  401 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR 832
            EAA+N  +N+    SY Y +L  YFDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L AME AL LEK  N+ LL LH++     DP + +F+E+ FL E+V+ I K+  +++ LR
Sbjct:   14 EAAVNRLVNMHLRASYTYLSLGFYFDRDDVALEGVGHFFRELAEEKREGAERLLKMQNQRGGRALFLDVQKPSQD----EWGKTLDAMEAALLLEKNLNQGLLDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLR 153          
BLAST of CN189003 vs. ExPASy Swiss-Prot
Match: FRIL2_MOUSE (Ferritin light chain 2 OS=Mus musculus GN=Ftl2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.924e-18
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = -1
Query:  395 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV 832
            EAA+N  +N+    SY Y +L  +FDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L A++ AL LEK  N+ LL LH++     DP + +F+ES FL ++V+ I K+  +++ LR V
Sbjct:   14 EAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREGAERLLKLQNERGGRALFQDVQKPSQD----EWGKTLEAIQAALRLEKNLNQALLDLHALGSARTDPHLCDFLESHFLDKEVKLIKKMGNHLTNLRRV 155          
BLAST of CN189003 vs. ExPASy Swiss-Prot
Match: FHL17_MOUSE (Ferritin heavy polypeptide-like 17 OS=Mus musculus GN=Fthl17 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 48/147 (32.65%), Postives = 71/147 (48.30%), Query Frame = -1
Query:  392 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 832
            E AIN  I +    SY Y ++  YFDRD++A                     FM  QN RGG + L  I +P  +  H        AME A  +E L N+ LL++H VA    DP +  F+E   L +QV+ + +++ Y++ LR +G
Sbjct:   17 EDAINTHIQLCLYASYEYMSMAVYFDRDDVAQENFKRFFLTKSHNCQTSAEMFMHLQNKRGGCISLQDIARPERDSWHG----GFQAMECAFHMEMLINQSLLNMHEVAKEKGDPHLCHFLEQNCLDQQVDILKEMSGYLTNLRQMG 159          
BLAST of CN189003 vs. ExPASy Swiss-Prot
Match: FHL19_HUMAN (Putative ferritin heavy polypeptide-like 19 OS=Homo sapiens GN=FTHL19 PE=5 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = -1
Query:  392 YFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 763
            YFD+D+ AL                     M  QNLRGG++ LH I +P  E    E G  L AME    LEK  N+ LL LH +A  N DPQ+ +F+E++FL +Q + I ++  Y+S L  +G
Sbjct:    4 YFDQDDAALEHFDRYFLRQSQEKREHAQELMSLQNLRGGRICLHDIRKP--EGQGWESG--LKAMECTFHLEKNINQSLLELHQLARENGDPQLCDFLENDFLNQQAKTIKELGGYLSNLHKMG 123          
The following BLAST results are available for this feature:
BLAST of CN189003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
FRIL_BOVIN8.638e-1933.13Ferritin light chain OS=Bos taurus GN=FTL PE=2 SV=... [more]
FRIL_PONAB1.128e-1832.52Ferritin light chain OS=Pongo abelii GN=FTL PE=2 S... [more]
FRIL_HUMAN1.473e-1832.52Ferritin light chain OS=Homo sapiens GN=FTL PE=1 S... [more]
FRIL_FELCA1.473e-1835.42Ferritin light chain OS=Felis catus GN=FTL PE=2 SV... [more]
FRIL2_MOUSE1.924e-1833.56Ferritin light chain 2 OS=Mus musculus GN=Ftl2 PE=... [more]
FHL17_MOUSE1.525e-1532.65Ferritin heavy polypeptide-like 17 OS=Mus musculus... [more]
FHL19_HUMAN5.794e-1537.90Putative ferritin heavy polypeptide-like 19 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189003 ID=CN189003; Name=CN189003; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTGCGAACAGAACTTTTATTGAACAACTTAATTATATTTA
TACAATCAGAAGATGGATTTGGTGCTCTGCTTAAACTATTAGATCCCTTC
ACACAGTCTGTTACTAAATAAAGAAAAAGCACCATCAAAAAGACTATCTA
AATGCGACCACACTAATATGATAAAGCAAGGAGGCTATTGAGTATTAACT
TTGTAGGACTTAACACTGTTTCAGCTTATTTTTTGTCAACACACTCAACC
TCCTGTGGCAGAGATACTTCAGAACATTTGGCAGAAAAGAGTTGACTAAA
GCACAAAGAAATGTAACAATATGGTTCTTCATCATGCAGCATCACCCTCG
TGGAGAAGCATTTGATCGAAGTGCCATAATCCGTGGCCTTTCCCAACCAT
CCTCAGTTGAGAAACATATTTTGCGATCTTGTTAATTGCTTCAACCTGCT
CACCCAAAAATTCACTCTCGACAAACTCTGCCATTTGGGGATCATTGTTT
CTATCCGCCACACTGTGCAGGCTCAGAAGCTTCTCGTTTGTTAGCTTCTC
CAGGGACAATGCTAGTTCCATTGCATACAAGGCATCCCCTTTCTCCGCAT
GATCAAACTCCGAAGGGGGCTGCATTATGGAGTGCAGTTTTACTTTTCCA
CCGCGCAAGTTCTGATACTCCATAAACTTCTCAGCATGTTCCCTTTCTTC
TTCACTGGACTCCTTGAAAAATTTGGCAAGGCCTCTCAGAGCAATATTAT
CCCGATCAAAGTACGCATACAGGGCATGGTACACGTATGAGACATTATAT
TCCACATTGATCTGCTCGTTGATAGCGGCCTC
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