CN189000

Overview
NameCN189000
Unique NameCN189000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189000_ssr10 microsatellite CN189000_ssr10:10..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:19..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_ENTIN (Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.883e-45
Identity = 78/111 (70.27%), Postives = 94/111 (84.68%), Query Frame = 1
Query:   73 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 405
            ++F +APPG+   G KIFK KCA+CHTV+ GAGHKQGPNLNG FGR SGT  G+SYSAA+K+   +W++ TLYDYLLNPKKYIPGTKMVF GLKKP++RADLIA+LK +TA
Sbjct:    1 STFABAPPGBPAKGAKIFKAKCAZCHTVBAGAGHKQGPNLNGAFGRTSGTAAGFSYSAABKBKTADWBZBTLYDYLLNPKKYIPGTKMVFAGLKKPZBRADLIAFLKDATA 111          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_CHLRE (Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 4.462e-44
Identity = 82/112 (73.21%), Postives = 92/112 (82.14%), Query Frame = 1
Query:   70 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 405
            M++F EAP G+   GEKIFKTKCAQCH  EKG GHKQGPNL GLFGR SGT  G++YS ANK  AV W E TLY+YLLNPKKY+PG KMVF GLKKP++RADLIAYLKQ+TA
Sbjct:    1 MSTFAEAPAGDLARGEKIFKTKCAQCHVAEKGGGHKQGPNLGGLFGRVSGTAAGFAYSKANKEAAVTWGESTLYEYLLNPKKYMPGNKMVFAGLKKPEERADLIAYLKQATA 112          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_SCHGR (Cytochrome c OS=Schistocerca gregaria PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.371e-37
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 1
Query:   91 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            P G+ + G+KIF  +CAQCHTVE G  HK GPNL+GLFGR++G  PG+SY+ ANK+  + W+E TL+ YL NPKKYIPGTKMVF GLKKP++RADLIAYLK+ST
Sbjct:    4 PQGDVEKGKKIFVQRCAQCHTVEAGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKSKGITWDENTLFIYLENPKKYIPGTKMVFAGLKKPEERADLIAYLKEST 107          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_MACSY (Cytochrome c OS=Macaca sylvanus GN=CYCS PE=3 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.177e-36
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  PGYSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_MACMU (Cytochrome c OS=Macaca mulatta GN=CYCS PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.177e-36
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  PGYSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_HIPAM (Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.007e-36
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G +PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLKQ+T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQSPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKQAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_PONAB (Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.622e-36
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  PGYSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_PANTR (Cytochrome c OS=Pan troglodytes GN=CYCS PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.622e-36
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  PGYSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_HUMAN (Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.622e-36
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  PGYSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_GORGO (Cytochrome c OS=Gorilla gorilla gorilla GN=CYCS PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.622e-36
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  PGYSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CN189000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_ENTIN6.883e-4570.27Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=... [more]
CYC_CHLRE4.462e-4473.21Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 ... [more]
CYC_SCHGR2.371e-3766.35Cytochrome c OS=Schistocerca gregaria PE=1 SV=2[more]
CYC_MACSY1.177e-3666.67Cytochrome c OS=Macaca sylvanus GN=CYCS PE=3 SV=3[more]
CYC_MACMU1.177e-3666.67Cytochrome c OS=Macaca mulatta GN=CYCS PE=1 SV=2[more]
CYC_HIPAM2.007e-3666.67Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=... [more]
CYC_PONAB2.622e-3666.67Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3[more]
CYC_PANTR2.622e-3666.67Cytochrome c OS=Pan troglodytes GN=CYCS PE=1 SV=2[more]
CYC_HUMAN2.622e-3666.67Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2[more]
CYC_GORGO2.622e-3666.67Cytochrome c OS=Gorilla gorilla gorilla GN=CYCS PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189000 ID=CN189000; Name=CN189000; organism=Citrus sinensis; type=EST; length=612bp
GAGGCACAGCTCTCTCTCTCTCTCTCTGCGTCTTCTTTCTCTCTTTGGAT
CTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCA
ATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCTCAGTGCCAC
ACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATT
GTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTA
ACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTG
CTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATT
GAAGAAGCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTA
CTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTG
TTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAAT
TTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAA
TTTGAGAAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTC
CTGGTTATAATC
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