CN189000

Overview
NameCN189000
Unique NameCN189000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189000_ssr10 microsatellite CN189000_ssr10:10..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:19..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_MIRLE (Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.219e-35
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKIAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_HORSE (Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.219e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG++Y+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC2_RAT (Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.219e-35
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 405
            G+A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  V W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLK++T+
Sbjct:    2 GDAEAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWTEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIQYLKEATS 104          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_SHEEP (Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_PIG (Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_PECGU (Cytochrome c OS=Pectinaria gouldii PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   85 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            + P G+A  G+K+F  +CAQCHTVE G  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W + TL+ YL NPKKYIPGTKM+F GLKK  +RADLIAYL++ST
Sbjct:    3 DIPAGDAAKGKKVFVQRCAQCHTVEAGGKHKTGPNLSGLFGRKTGQAPGFSYTDANKNKGITWGKDTLWVYLENPKKYIPGTKMIFAGLKKKNERADLIAYLEEST 108          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_MACGI (Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KCAQCHTVEKG  HK GPNLNG+FGR++G  PG++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGIFGRKTGQAPGFTYTDANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_LUCCU (Cytochrome c OS=Lucilia cuprina PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 64/104 (61.54%), Postives = 82/104 (78.85%), Query Frame = 1
Query:   91 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            P G+ + G+KIF  +CAQCHTVE G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W++ TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_COLLI (Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 405
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLKQ+TA
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKQATA 104          
BLAST of CN189000 vs. ExPASy Swiss-Prot
Match: CYC_BOVIN (Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   97 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 402
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CN189000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_MIRLE2.219e-3565.69Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2[more]
CYC_HORSE2.219e-3563.73Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2[more]
CYC2_RAT2.219e-3566.02Cytochrome c, testis-specific OS=Rattus norvegicus... [more]
CYC_SHEEP2.899e-3564.71Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2[more]
CYC_PIG2.899e-3564.71Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2[more]
CYC_PECGU2.899e-3562.26Cytochrome c OS=Pectinaria gouldii PE=3 SV=1[more]
CYC_MACGI2.899e-3564.71Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV... [more]
CYC_LUCCU2.899e-3561.54Cytochrome c OS=Lucilia cuprina PE=1 SV=2[more]
CYC_COLLI2.899e-3565.05Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2[more]
CYC_BOVIN2.899e-3564.71Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189000 ID=CN189000; Name=CN189000; organism=Citrus sinensis; type=EST; length=612bp
GAGGCACAGCTCTCTCTCTCTCTCTCTGCGTCTTCTTTCTCTCTTTGGAT
CTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCA
ATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCTCAGTGCCAC
ACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATT
GTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTA
ACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTG
CTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATT
GAAGAAGCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTA
CTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTG
TTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAAT
TTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAA
TTTGAGAAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTC
CTGGTTATAATC
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