CN188989

Overview
NameCN188989
Unique NameCN188989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.667e-40
Identity = 72/114 (63.16%), Postives = 90/114 (78.95%), Query Frame = 1
Query:   55 RAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            R PC +K  +KRGPW+  ED +L +++ K+G + WR +PK AGL RCGKSCRLRW+NYLRPD+K+G  T+ EE+ II LH  LGNRWSKIA  +PGRTDNEIKN WNTH+KK+L
Sbjct:    3 RQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKL 116          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.940e-40
Identity = 72/116 (62.07%), Postives = 95/116 (81.90%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHE-NWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            GRAPCCDK++VKRGPWSP ED +L  +I+K+G+  NW + P +AGL RCGKSCRLRW+NYLRP++K G+F++EE+  I  L  ++G+RWS IA+ LPGRTDN+IKN WNT L+K+L
Sbjct:    2 GRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKL 117          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.463e-38
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 393
            GR  CC K  VKRG W+  ED  L  +++ HG   WR +P++AGL RCGKSCRLRW+NYLRP+++RGN + +EED IIRLH  LGNRWS IA +LPGRTDNEIKN WN+ L +R
Sbjct:    2 GRRACCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRR 115          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37
Identity = 67/118 (56.78%), Postives = 90/118 (76.27%), Query Frame = 1
Query:   76 SQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQES 429
            ++ K+G W+  ED  L+ +++ HG  +W  + K+ GL RCGKSCRLRW+NYL P+VKRGNFT++EED IIRLH+ LGNRWS IA ++PGRTDN++KN WNTHL K+L  +D K  Q +
Sbjct:   14 NEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSN 131          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.369e-36
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 1
Query:   43 MGKGRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            MG+  +    + +V++G WSP ED +L   I +HG   W ++P+ A L RCGKSCRLRWINYLRPD+KRG F+Q+EED I+ LH+ LGNRWS+IAS LPGRTDNEIKN WN+ +KK+L
Sbjct:    1 MGRPSSGAVGQPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKL 118          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 72/130 (55.38%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   43 MGKGRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQESK 432
            MGK       + ++ RG W+  ED  L  +I  HG   W  LP QAGL RCGKSCRLRW NYLRP +KRGN + +EE+ IIRLH  LGNRWS IA +LPGRTDNEIKN WN++L+KRL     K+ +  K
Sbjct:    1 MGKRATTSVRREELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQPKRIK 130          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1
Query:   79 QVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            ++K+G WSP ED +L+ ++  +G   W  + K AGL RCGKSCRLRWINYLRPD+KRG F+ +EED IIR H  LGNRWS+IA++LPGRTDNEIKN WN+ +KKRL
Sbjct:   17 KMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 122          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   79 QVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRD 408
            + K+G W+  ED  L+ +++ HG  +W  + K+ GL RCGKSCRLRW+NYL P+V RGNFT +EED IIRLH+ LGNRWS IA ++PGRTDN++KN WNTHL K+L   D
Sbjct:   11 EYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGD 120          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.583e-35
Identity = 65/111 (58.56%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   73 KSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFR 405
            KS VKRG W P ED+ L ++++ HG  NW  + +++GL R GKSCRLRW NYLRP++KRG+ + +E+D IIR+H+ LGNRWS IA +LPGRTDNE+KN WNTHL K+ + R
Sbjct:    9 KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSR 119          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35
Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = 1
Query:   82 VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 390
            +K+GPW+  ED  L+ +++KHG  NW A+ K  GL RCGKSCRLRW N+LRP++K+G FT EEE  II+LH  +GN+W+++A+ LPGRTDNEIKN WNT +K+
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
The following BLAST results are available for this feature:
BLAST of CN188989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB15_ANTMA2.667e-4063.16Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
RAX1_ARATH5.940e-4062.07Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYBC_MAIZE1.463e-3861.40Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
WER_ARATH1.239e-3756.78Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB3_HORVU1.369e-3659.32Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
TT2_ARATH1.789e-3655.38Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB46_ARATH1.514e-3563.21Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB23_ARATH1.514e-3558.18Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB82_ARATH2.583e-3558.56Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
GAM1_ORYSJ5.754e-3558.25Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188989 ID=CN188989; Name=CN188989; organism=Citrus sinensis; type=EST; length=767bp
GAGGAGTCAGTTGGGAGTCTGAAAATTTTCTTATTATCTCAAATGGGAAA
AGGGAGAGCTCCATGTTGTGATAAGAGTCAAGTGAAGAGAGGGCCATGGA
GTCCTGGTGAAGATTTAAGACTCATCACTTTTATTCAGAAACATGGTCAT
GAAAATTGGAGAGCGCTTCCTAAACAAGCTGGCCTTCTGCGATGTGGTAA
GAGTTGCCGGCTGAGATGGATTAATTACCTGAGACCAGACGTGAAACGGG
GGAACTTCACTCAAGAGGAAGAGGACACTATCATAAGGTTACATGAAAGC
TTGGGAAACAGGTGGTCCAAAATTGCATCTCAGTTGCCTGGAAGAACAGA
TAATGAGATTAAAAATGTGTGGAACACACATTTGAAGAAAAGGTTGTCTT
TCAGAGATGTTAAAAAAGATCAAGAATCTAAAGAATCTTCATCAATAAGC
TCCCCTTCCTCCTCCTCATCCAGCACCATTATATCATCAGGCAAAAGAAG
GGCAGATACTGAACTTGATGAGCACCAATGTGACCAAAACAATTACGTGC
CCAAAAAGCCTCGTGAAGGACACGGTAGCATGACAGTATCGGAAAAATTA
GTACAGCAGAGTTCAGAAACTGAAGAATCAAACCAAATCAACACGAGCAA
GGGGGTGGTGATGATGACGAAGGAATTATTAGATTCGTCTTGCTCTTCGG
ATAACTCAGTTGTGTCAAATTCTAGCCAAGTTGATGCCACAAGGCCGAAA
AGACCAAATGGGTACAT
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