CN188989

Overview
NameCN188989
Unique NameCN188989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35
Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = 1
Query:   82 VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 390
            +K+GPW+  ED  L+ +++KHG  NW A+ K  GL RCGKSCRLRW N+LRP++K+G FT EEE  II+LH  +GN+W+++A+ LPGRTDNEIKN WNT +K+
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 67/113 (59.29%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   73 KSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDV 411
            +++V++GPW+  EDL LI +I  HG   W +L K AGL R GKSCRLRW+NYLRPDV+RGN T EE+  I+ LH   GNRWSKIA  LPGRTDNEIKN W T ++K +   DV
Sbjct:   17 EAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDV 129          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   55 RAPCCDKS-QVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRD 408
            + PC  +  +V++GPW+  EDL LI +I  HG   W +L + AGL R GKSCRLRW+NYLRPDV+RGN T EE+  I+ LH   GNRWSKIA  LPGRTDNEIKN W T ++K +   D
Sbjct:    3 KKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQGD 121          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 61/109 (55.96%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   70 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            +  + K+G W+  ED  L+ ++  HG   W  + ++ GL RCGKSCRLRW+NYL P+V +GNFT++EED IIRLH+ LGNRWS IA ++PGRTDN++KN WNTHL K+L
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 61/109 (55.96%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   70 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            +  + K+G W+  ED  L+ ++  HG   W  + ++ GL RCGKSCRLRW+NYL P+V +GNFT++EED IIRLH+ LGNRWS IA ++PGRTDN++KN WNTHL K+L
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.417e-33
Identity = 67/116 (57.76%), Postives = 81/116 (69.83%), Query Frame = 1
Query:   55 RAPCCDKS-QVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWN-THLKKRL 396
            + PC     +V++GPW+  EDL LI FI  HG   W  + + AGL R GKSCRLRW+NYLRPDV+RGN T EE+  I+ LH   GNRWSKIA  LPGRTDNEIKN WN T ++K +
Sbjct:    3 KKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHI 118          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.200e-32
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   85 KRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 393
            ++G WSP ED +L +FI  +GH  W  +P +AGL R GKSCRLRWINYLRP +KR   + EEE+TI+  H SLGN+WS+IA  LPGRTDNEIKN W++HLKK+
Sbjct:   11 RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 8.598e-31
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   73 KSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 393
            + + ++GPW+  ED+ L+ F+   G   W  + K +GL R GKSCRLRW+NYL P +KRG  T +EE  ++ LH   GNRWSKIA +LPGRTDNEIKN W TH++K+
Sbjct:    5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 111          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.123e-30
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   85 KRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 393
            ++GPW+  ED+ L+ F+   G   W  + K +GL R GKSCRLRW+NYL P +KRG  T +EE  ++ LH   GNRWSKIA +LPGRTDNEIKN W TH++K+
Sbjct:    8 RKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 110          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.467e-30
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 1
Query:   82 VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 393
            +++G W+  ED  L   I K+G   W  +P +AGL RC KSCRLRW+NYL+P +KRG F+ +E D ++RLH+ LGNRWS IA +LPGRT N++KN WNTHL K+
Sbjct:    8 LRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
The following BLAST results are available for this feature:
BLAST of CN188989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
GAM1_ORYSI5.754e-3558.25Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB21_ARATH9.814e-3559.29Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA3.729e-3456.30Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
GL1_ARATH4.871e-3455.96Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY4.871e-3455.96Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYB40_ANTMA2.417e-3357.76Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
LAF1_ARATH1.200e-3261.17Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB59_ARATH8.598e-3152.34Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH1.123e-3054.37Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MY114_ARATH1.467e-3054.81Transcription factor MYB114 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188989 ID=CN188989; Name=CN188989; organism=Citrus sinensis; type=EST; length=767bp
GAGGAGTCAGTTGGGAGTCTGAAAATTTTCTTATTATCTCAAATGGGAAA
AGGGAGAGCTCCATGTTGTGATAAGAGTCAAGTGAAGAGAGGGCCATGGA
GTCCTGGTGAAGATTTAAGACTCATCACTTTTATTCAGAAACATGGTCAT
GAAAATTGGAGAGCGCTTCCTAAACAAGCTGGCCTTCTGCGATGTGGTAA
GAGTTGCCGGCTGAGATGGATTAATTACCTGAGACCAGACGTGAAACGGG
GGAACTTCACTCAAGAGGAAGAGGACACTATCATAAGGTTACATGAAAGC
TTGGGAAACAGGTGGTCCAAAATTGCATCTCAGTTGCCTGGAAGAACAGA
TAATGAGATTAAAAATGTGTGGAACACACATTTGAAGAAAAGGTTGTCTT
TCAGAGATGTTAAAAAAGATCAAGAATCTAAAGAATCTTCATCAATAAGC
TCCCCTTCCTCCTCCTCATCCAGCACCATTATATCATCAGGCAAAAGAAG
GGCAGATACTGAACTTGATGAGCACCAATGTGACCAAAACAATTACGTGC
CCAAAAAGCCTCGTGAAGGACACGGTAGCATGACAGTATCGGAAAAATTA
GTACAGCAGAGTTCAGAAACTGAAGAATCAAACCAAATCAACACGAGCAA
GGGGGTGGTGATGATGACGAAGGAATTATTAGATTCGTCTTGCTCTTCGG
ATAACTCAGTTGTGTCAAATTCTAGCCAAGTTGATGCCACAAGGCCGAAA
AGACCAAATGGGTACAT
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