CN188989

Overview
NameCN188989
Unique NameCN188989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   85 KRGPWSPGEDLRLITFIQKHGHENWRALPKQAG--LLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 393
            +R  WS  ED  L  ++++ G   W  + ++    L R  KSC  RW NYL+P +K+G+ T+EE+  +IRL E  GN+W KIA+++PGRT   +   W    +K+
Sbjct:    3 ERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 33/121 (27.27%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   37 SQMGKGRAPCCDKSQVKRGP--WSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 393
            S+ G+G+     ++ ++R P  W+  ED +L   +  +G + W+ +  + G  + G  C   W   L PD+++G + ++EE+ ++RL    G+ W KIA ++  RTD + +  +   L+ R
Sbjct:   52 SKRGRGQI----QNGIRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTDIQCRYQYLKSLQSR 168          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: SNPC4_HUMAN (snRNA-activating protein complex subunit 4 OS=Homo sapiens GN=SNAPC4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 34/109 (31.19%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   82 VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFR 405
            +K+G W+P ED +L+  + K+G ++W  + ++    R    CR R++  L   +K+G +  +EE+ +I L E  G   W+KIAS+LP R+ ++  + W   + K+   R
Sbjct:  399 LKKGYWAPEEDAKLLQAVAKYGEQDWFKIREEVP-GRSDAQCRDRYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIASELPHRSGSQCLSKWKIMMGKKQGLR 506          
The following BLAST results are available for this feature:
BLAST of CN188989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
AS1_ARATH2.685e-1638.10Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
MYBM_DICDI3.397e-1127.27Myb-like protein M OS=Dictyostelium discoideum GN=... [more]
SNPC4_HUMAN7.567e-1131.19snRNA-activating protein complex subunit 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188989 ID=CN188989; Name=CN188989; organism=Citrus sinensis; type=EST; length=767bp
GAGGAGTCAGTTGGGAGTCTGAAAATTTTCTTATTATCTCAAATGGGAAA
AGGGAGAGCTCCATGTTGTGATAAGAGTCAAGTGAAGAGAGGGCCATGGA
GTCCTGGTGAAGATTTAAGACTCATCACTTTTATTCAGAAACATGGTCAT
GAAAATTGGAGAGCGCTTCCTAAACAAGCTGGCCTTCTGCGATGTGGTAA
GAGTTGCCGGCTGAGATGGATTAATTACCTGAGACCAGACGTGAAACGGG
GGAACTTCACTCAAGAGGAAGAGGACACTATCATAAGGTTACATGAAAGC
TTGGGAAACAGGTGGTCCAAAATTGCATCTCAGTTGCCTGGAAGAACAGA
TAATGAGATTAAAAATGTGTGGAACACACATTTGAAGAAAAGGTTGTCTT
TCAGAGATGTTAAAAAAGATCAAGAATCTAAAGAATCTTCATCAATAAGC
TCCCCTTCCTCCTCCTCATCCAGCACCATTATATCATCAGGCAAAAGAAG
GGCAGATACTGAACTTGATGAGCACCAATGTGACCAAAACAATTACGTGC
CCAAAAAGCCTCGTGAAGGACACGGTAGCATGACAGTATCGGAAAAATTA
GTACAGCAGAGTTCAGAAACTGAAGAATCAAACCAAATCAACACGAGCAA
GGGGGTGGTGATGATGACGAAGGAATTATTAGATTCGTCTTGCTCTTCGG
ATAACTCAGTTGTGTCAAATTCTAGCCAAGTTGATGCCACAAGGCCGAAA
AGACCAAATGGGTACAT
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