CN182300

Overview
NameCN182300
Unique NameCN182300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K +   C A IG VAGGGRTEKPL+KAG +++K+R K   WP+VRGVAMN V+HP GGG  QH G   TV R  PPG+KVG I
Sbjct:  146 KWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSI 228          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  314 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 556
            K +   C+A IG VAGGGRTEKP +KAG  +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:  147 KRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 556
            K + S CRA IG VAGGGR EKP +KAG  YH  + K   WP+VRGVAMN V+HP GGG HQH G  +TV R+  PPG+KVG I
Sbjct:  150 KALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSRKKVPPGRKVGHI 233          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K++ + CRA IG VAG GR EKP +KAG  Y+  R     WP VRGVAMNPV HPHGGG+H+  G  +TV R APPGQKVG I
Sbjct:  147 KLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVVRGVAMNPVSHPHGGGSHKRPGKPTTVARTAPPGQKVGHI 229          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = -3
Query:  314 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 538
            CRA IG VAGGGRT+KP +KAGN +HK + +   WP VRGVAMN V+HP GGG  QH G   ++ R+APPG+KVG
Sbjct:  153 CRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 227          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K + +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  145 KAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 51/83 (61.45%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K +   CRA +G VAGGGR EKP LKAG  YH  R K      VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:  150 KALNPQCRATVGVVAGGGRREKPFLKAGKKYHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.153e-22
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K I       +G VAGGG  EKPLLKAGN Y K++VK   WP VRGVAMN V HPHGGG HQ +  +STV R+ PPG+KVG I
Sbjct:  145 KEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGGGLHQSVSRSSTVARNTPPGRKVGHI 227          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = -3
Query:  308 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 538
            CRA IG VAGGGRTEKP ++AGN ++K   K   WP VRGVAMN V+HP GGG  QH G   TV R+ PPG+KVG I
Sbjct:  153 CRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.148e-21
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = -3
Query:  308 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 538
            C A +G VAGGGR +KP+LKAG  YHK +     WP+VRGVAMN ++HP GGG HQH G   TV R A PG+KVG +
Sbjct:  155 CLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSV 231          
The following BLAST results are available for this feature:
BLAST of CN182300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL2_METTP1.356e-2260.2450S ribosomal protein L2P OS=Methanosaeta thermoph... [more]
RL2_HALWD1.356e-2259.2650S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_METJA1.771e-2260.7150S ribosomal protein L2P OS=Methanocaldococcus ja... [more]
RL2_KORCO1.771e-2260.2450S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_HALMA1.771e-2261.3350S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_SULSO2.313e-2261.4550S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_METTH3.946e-2261.4550S ribosomal protein L2P OS=Methanobacterium ther... [more]
RL2_METS55.153e-2260.2450S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL2_UNCMA8.790e-2262.3450S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_METLZ1.148e-2158.4450S ribosomal protein L2P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182300 ID=CN182300; Name=CN182300; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTACCTAATTCGATGAAGGCATCCATTAATATATC
CAAAAATATCAAAATCAACTAAAGTTTTGGATAAGAGCAAATTAAGCTAA
ACTTTAAGCCAACATAATTTAACATCAGGATCATCCCAGAGATCCAAATC
TGAACAAATTTTTCCAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAG
ATCGCGATAGAGAGACGATTTGTGGTAACACAAAGGATTTAAGCCTTGTC
GGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCC
TGGCTGCAATAAGACCAACCTTCTGGCCAGGGGGAGCATCACGCCTAACA
GTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTC
CACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCA
CTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTC
CTCCCTCCGCCGGCAACCTGCCCAATCATAGCTCTGCAGCCACTTGGAAT
AATCTTTT
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