CN182300
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22 Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = -3 Query: 308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556 K + C A IG VAGGGRTEKPL+KAG +++K+R K WP+VRGVAMN V+HP GGG QH G TV R PPG+KVG I Sbjct: 146 KWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSI 228
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22 Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = -3 Query: 314 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 556 K + C+A IG VAGGGRTEKP +KAG +HK + + WP+VRGVAMN V+HP GGG QH G +V RDAPPG+KVG Sbjct: 147 KRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22 Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = -3 Query: 308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 556 K + S CRA IG VAGGGR EKP +KAG YH + K WP+VRGVAMN V+HP GGG HQH G +TV R+ PPG+KVG I Sbjct: 150 KALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSRKKVPPGRKVGHI 233
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22 Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = -3 Query: 308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556 K++ + CRA IG VAG GR EKP +KAG Y+ R WP VRGVAMNPV HPHGGG+H+ G +TV R APPGQKVG I Sbjct: 147 KLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVVRGVAMNPVSHPHGGGSHKRPGKPTTVARTAPPGQKVGHI 229
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4) HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22 Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = -3 Query: 314 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 538 CRA IG VAGGGRT+KP +KAGN +HK + + WP VRGVAMN V+HP GGG QH G ++ R+APPG+KVG Sbjct: 153 CRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVG 227
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22 Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = -3 Query: 308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556 K + + RA +G VAGGG EKPLLKAG Y K++VK WP VRGVAMN V+HPHGGG HQ + STV R+APPG+KVG I Sbjct: 145 KAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22 Identity = 51/83 (61.45%), Postives = 56/83 (67.47%), Query Frame = -3 Query: 308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556 K + CRA +G VAGGGR EKP LKAG YH R K VRGVAMN V+HPHGGGN QH G +TV R APPG+KVG I Sbjct: 150 KALNPQCRATVGVVAGGGRREKPFLKAGKKYHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.153e-22 Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = -3 Query: 308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556 K I +G VAGGG EKPLLKAGN Y K++VK WP VRGVAMN V HPHGGG HQ + +STV R+ PPG+KVG I Sbjct: 145 KEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGGGLHQSVSRSSTVARNTPPGRKVGHI 227
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22 Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = -3 Query: 308 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 538 CRA IG VAGGGRTEKP ++AGN ++K K WP VRGVAMN V+HP GGG QH G TV R+ PPG+KVG I Sbjct: 153 CRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSI 229
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.148e-21 Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = -3 Query: 308 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 538 C A +G VAGGGR +KP+LKAG YHK + WP+VRGVAMN ++HP GGG HQH G TV R A PG+KVG + Sbjct: 155 CLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSV 231 The following BLAST results are available for this feature:
BLAST of CN182300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182300 ID=CN182300; Name=CN182300; organism=Citrus sinensis; type=EST; length=558bpback to top |