CN188976

Overview
NameCN188976
Unique NameCN188976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12023 contig Csv1_Contig12023:29..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.666e-48
Identity = 77/137 (56.20%), Postives = 98/137 (71.53%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G     ++     F+ G  CG+C++++C N    C PGSI VTAT+FC          GGWCNPP+ HFD+++PA   IAQY+AGIVPVS+RRVPC + GG+RFT+NGHSYFNLVL+TNV GAGDVR+VSIKG
Sbjct:   50 LYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKG 186          

HSP 2 Score: 40.0466 bits (92), Expect = 3.666e-48
Identity = 19/37 (51.35%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  108 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            YG GW  AHATFY              YGNLYS+GYG
Sbjct:   21 YG-GWQSAHATFYGGGDASGTMGGACGYGNLYSQGYG 56          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.227e-48
Identity = 75/120 (62.50%), Postives = 93/120 (77.50%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG+C++++C ND +WC PGS+ VTAT+ C          GGWCNPP+ HFD+++PA  QI  Y+AGIVPVSYRRVPC + GGIRFTINGHSYFNLVL+TNV G GDV++VSIKG
Sbjct:   72 FNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKG 191          

HSP 2 Score: 36.5798 bits (83), Expect = 6.227e-48
Identity = 18/37 (48.65%), Postives = 18/37 (48.65%), Query Frame = 3
Query:  108 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            YG  W  AHATFY              YGNLYS GYG
Sbjct:   26 YGS-WQSAHATFYGGGDASGTMGGACGYGNLYSTGYG 61          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.057e-47
Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPG--SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGACF+IKC +DPRWC PG  SI VTAT+FC          GGWCNPP++HFDL+ P   +I  Y+AGIVPVSYRRVPC + GGIRFT+NG  YFNLVL+TNV GAGD+  VS+KG
Sbjct:   79 FNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKG 200          

HSP 2 Score: 38.5058 bits (88), Expect = 1.057e-47
Identity = 17/36 (47.22%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G  W +AHATFY              YGNLYS+GYG
Sbjct:   33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYG 68          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.801e-47
Identity = 79/141 (56.03%), Postives = 95/141 (67.38%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDP--RWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G    +++     F+ G  CGACF+IKCVN P   WC PGS  I +TAT+FC          GGWCNPP+ HFDL+ P    IA+Y+AGIVPVSYRRVPC + GG+RFTING  YFNLVLITNV GAGD+   S+KG
Sbjct:   62 LYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKG 202          

HSP 2 Score: 39.2762 bits (90), Expect = 8.801e-47
Identity = 19/38 (50.00%), Postives = 20/38 (52.63%), Query Frame = 3
Query:  108 YGQG-WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            YG G W  AHATFY              YGNLYS+GYG
Sbjct:   31 YGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYG 68          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.496e-46
Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGACF++KC +DP+WC  GS  IF+TAT+FC          GGWCNPP+ HFDL+ P   +IA+Y+AGIVPVS+RRVPC + GGIRFTING  YFNLVL+TNV GAG++  + +KG
Sbjct:   74 FNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKG 195          

HSP 2 Score: 40.817 bits (94), Expect = 1.496e-46
Identity = 18/36 (50.00%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G GW  AHATFY              YGNLYS+GYG
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYG 63          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.614e-46
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCV---NDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604
            L  +G     ++     F+ G+ CGACF+++C         C PGS+ VTAT+FC          GGWCNPP+ HFD+SQP  ++IA +KAGIVPVSYRRV C + GGIRFTINGHSYFNLVL+TNV GAGDV AV++K
Sbjct:   90 LYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVK 228          

HSP 2 Score: 41.9726 bits (97), Expect = 5.614e-46
Identity = 18/36 (50.00%), Postives = 20/36 (55.56%), Query Frame = 3
Query:  111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G GW+ AHATFY              YGNLYS+GYG
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYG 96          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.755e-45
Identity = 79/121 (65.29%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F  G+ CGACF++ CVNDP+WC  G SI VTAT+FC          GG C+PP  HFDLSQP  E+IA YK+GI+PV YRRV C R+GGIRFTINGHSYFNLVL+TNV GAGDV +VS+KG
Sbjct:   81 FDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKG 193          

HSP 2 Score: 37.7354 bits (86), Expect = 2.755e-45
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W +AHATFY              YGNLYS+GYG
Sbjct:   38 WINAHATFYGGGDASGTMGGACGYGNLYSQGYG 70          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.691e-42
Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRW-CRPG--SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G     ++     F+ G+ CG+C++++C  D R  C PG  ++ VTAT+FC          GGWCNPP++HFDL++PA  +IA++ AGIVPVS+RRV C R GG+RFT+NGH+YFNLVL+TNV GAGDVR++++KG
Sbjct:   54 LYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKG 193          

HSP 2 Score: 35.4242 bits (80), Expect = 2.691e-42
Identity = 15/33 (45.45%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W   HATFY              YGNLYS+GYG
Sbjct:   28 WQPGHATFYGGGDASGTMGGACGYGNLYSQGYG 60          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.952e-42
Identity = 75/127 (59.06%), Postives = 89/127 (70.08%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVN----DPRWCRPG----SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604
            F  G+ CGACF+++C      D R C P     SI VTATD C          GGWCNPP  HFDLSQPA  +IA++++GIVPVSYRRV C R GG+RFTINGHSYFNLVL++NV GAGDV AV++K
Sbjct:   73 FGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVK 199          

HSP 2 Score: 38.5058 bits (88), Expect = 5.952e-42
Identity = 16/33 (48.48%), Postives = 17/33 (51.52%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            WTDAHATFY              YGN Y +GYG
Sbjct:   30 WTDAHATFYGGADASGTMGGACGYGNTYGQGYG 62          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.237e-41
Identity = 75/122 (61.48%), Postives = 89/122 (72.95%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC-VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGACF I C     +WC+PG SI VTAT+FC          GGWCNPP++HFD+SQPA E IA Y+AGIVPV+YRRVPC R+GGIRF +NGHSYF LVL+TNV G+G V  + IKG
Sbjct:   68 FNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKG 189          

HSP 2 Score: 31.187 bits (69), Expect = 2.237e-41
Identity = 14/33 (42.42%), Postives = 15/33 (45.45%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            WT A ATFY              YG+LY  GYG
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYG 57          
The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXPA4_ORYSI3.666e-4856.20Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ORYSJ6.227e-4862.50Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH1.057e-4763.11Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ8.801e-4756.03Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH1.496e-4659.02Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA5_ORYSJ5.614e-4654.68Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH2.755e-4565.29Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA6_ORYSJ2.691e-4250.71Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ5.952e-4259.06Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ2.237e-4161.48Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bp
GACGCCTCTCTTTCTCTCTTAAAAAGATACGCAAGCAAAAGGGTTTCAGG
AACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTC
ATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTG
GGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTA
TACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCGCTTTT
CACATTGGCATGATCTGTGGGGCTTGTTTTGATATCAAGTGTGTTAATGA
CCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACTGATTTTT
GCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCT
CCCCAGCAACATTTTGACCTCTCTCAGCCTGCGCTTGAACAAATTGCTCA
GTACAAAGCTGGTATAGTACCTGTGTCTTACAGAAGGGTTCCATGCACTA
GGAACGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTA
GTCCTAATCACAAACGTCCGAGGCGCTGGTGATGTGCGTGCTGTTTCAAT
CAAAGGGT
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