CN188976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 3.666e-48 Identity = 77/137 (56.20%), Postives = 98/137 (71.53%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G ++ F+ G CG+C++++C N C PGSI VTAT+FC GGWCNPP+ HFD+++PA IAQY+AGIVPVS+RRVPC + GG+RFT+NGHSYFNLVL+TNV GAGDVR+VSIKG Sbjct: 50 LYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKG 186 HSP 2 Score: 40.0466 bits (92), Expect = 3.666e-48 Identity = 19/37 (51.35%), Postives = 20/37 (54.05%), Query Frame = 3 Query: 108 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 YG GW AHATFY YGNLYS+GYG Sbjct: 21 YG-GWQSAHATFYGGGDASGTMGGACGYGNLYSQGYG 56
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 6.227e-48 Identity = 75/120 (62.50%), Postives = 93/120 (77.50%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG+C++++C ND +WC PGS+ VTAT+ C GGWCNPP+ HFD+++PA QI Y+AGIVPVSYRRVPC + GGIRFTINGHSYFNLVL+TNV G GDV++VSIKG Sbjct: 72 FNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKG 191 HSP 2 Score: 36.5798 bits (83), Expect = 6.227e-48 Identity = 18/37 (48.65%), Postives = 18/37 (48.65%), Query Frame = 3 Query: 108 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 YG W AHATFY YGNLYS GYG Sbjct: 26 YGS-WQSAHATFYGGGDASGTMGGACGYGNLYSTGYG 61
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.057e-47 Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPG--SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CGACF+IKC +DPRWC PG SI VTAT+FC GGWCNPP++HFDL+ P +I Y+AGIVPVSYRRVPC + GGIRFT+NG YFNLVL+TNV GAGD+ VS+KG Sbjct: 79 FNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKG 200 HSP 2 Score: 38.5058 bits (88), Expect = 1.057e-47 Identity = 17/36 (47.22%), Postives = 19/36 (52.78%), Query Frame = 3 Query: 111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 G W +AHATFY YGNLYS+GYG Sbjct: 33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYG 68
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 8.801e-47 Identity = 79/141 (56.03%), Postives = 95/141 (67.38%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDP--RWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G +++ F+ G CGACF+IKCVN P WC PGS I +TAT+FC GGWCNPP+ HFDL+ P IA+Y+AGIVPVSYRRVPC + GG+RFTING YFNLVLITNV GAGD+ S+KG Sbjct: 62 LYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKG 202 HSP 2 Score: 39.2762 bits (90), Expect = 8.801e-47 Identity = 19/38 (50.00%), Postives = 20/38 (52.63%), Query Frame = 3 Query: 108 YGQG-WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 YG G W AHATFY YGNLYS+GYG Sbjct: 31 YGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYG 68
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 1.496e-46 Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CGACF++KC +DP+WC GS IF+TAT+FC GGWCNPP+ HFDL+ P +IA+Y+AGIVPVS+RRVPC + GGIRFTING YFNLVL+TNV GAG++ + +KG Sbjct: 74 FNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKG 195 HSP 2 Score: 40.817 bits (94), Expect = 1.496e-46 Identity = 18/36 (50.00%), Postives = 19/36 (52.78%), Query Frame = 3 Query: 111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 G GW AHATFY YGNLYS+GYG Sbjct: 28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYG 63
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 5.614e-46 Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCV---NDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604 L +G ++ F+ G+ CGACF+++C C PGS+ VTAT+FC GGWCNPP+ HFD+SQP ++IA +KAGIVPVSYRRV C + GGIRFTINGHSYFNLVL+TNV GAGDV AV++K Sbjct: 90 LYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVK 228 HSP 2 Score: 41.9726 bits (97), Expect = 5.614e-46 Identity = 18/36 (50.00%), Postives = 20/36 (55.56%), Query Frame = 3 Query: 111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 G GW+ AHATFY YGNLYS+GYG Sbjct: 61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYG 96
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 2.755e-45 Identity = 79/121 (65.29%), Postives = 92/121 (76.03%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F G+ CGACF++ CVNDP+WC G SI VTAT+FC GG C+PP HFDLSQP E+IA YK+GI+PV YRRV C R+GGIRFTINGHSYFNLVL+TNV GAGDV +VS+KG Sbjct: 81 FDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKG 193 HSP 2 Score: 37.7354 bits (86), Expect = 2.755e-45 Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W +AHATFY YGNLYS+GYG Sbjct: 38 WINAHATFYGGGDASGTMGGACGYGNLYSQGYG 70
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 2.691e-42 Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRW-CRPG--SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G ++ F+ G+ CG+C++++C D R C PG ++ VTAT+FC GGWCNPP++HFDL++PA +IA++ AGIVPVS+RRV C R GG+RFT+NGH+YFNLVL+TNV GAGDVR++++KG Sbjct: 54 LYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKG 193 HSP 2 Score: 35.4242 bits (80), Expect = 2.691e-42 Identity = 15/33 (45.45%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W HATFY YGNLYS+GYG Sbjct: 28 WQPGHATFYGGGDASGTMGGACGYGNLYSQGYG 60
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 5.952e-42 Identity = 75/127 (59.06%), Postives = 89/127 (70.08%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVN----DPRWCRPG----SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604 F G+ CGACF+++C D R C P SI VTATD C GGWCNPP HFDLSQPA +IA++++GIVPVSYRRV C R GG+RFTINGHSYFNLVL++NV GAGDV AV++K Sbjct: 73 FGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVK 199 HSP 2 Score: 38.5058 bits (88), Expect = 5.952e-42 Identity = 16/33 (48.48%), Postives = 17/33 (51.52%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 WTDAHATFY YGN Y +GYG Sbjct: 30 WTDAHATFYGGADASGTMGGACGYGNTYGQGYG 62
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 2.237e-41 Identity = 75/122 (61.48%), Postives = 89/122 (72.95%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC-VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CGACF I C +WC+PG SI VTAT+FC GGWCNPP++HFD+SQPA E IA Y+AGIVPV+YRRVPC R+GGIRF +NGHSYF LVL+TNV G+G V + IKG Sbjct: 68 FNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKG 189 HSP 2 Score: 31.187 bits (69), Expect = 2.237e-41 Identity = 14/33 (42.42%), Postives = 15/33 (45.45%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 WT A ATFY YG+LY GYG Sbjct: 25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYG 57 The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bpback to top |