CN188976

Overview
NameCN188976
Unique NameCN188976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12023 contig Csv1_Contig12023:29..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 4.946e-41
Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKC--VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G   + ++     F+ G+ CG C+ + C    D  WC+PG S+ +TAT+FC          GGWCNPP+ HFD++QPA E+I  Y+ GI+PV Y+RVPC + GG+RFTINGH YF LVL+TNV  AG ++A+ +KG
Sbjct:   60 LYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKG 199          

HSP 2 Score: 38.1206 bits (87), Expect = 4.946e-41
Identity = 16/34 (47.06%), Postives = 18/34 (52.94%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW  AHATFY              YGNLY++GYG
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYG 66          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.095e-40
Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGACF+++C      C  G++ VTAT+ C          GGWCNPP+ HFD+++PA  +IAQ +AG+VPV YRRV C + GGIRFTI GHSYFNLVL+TNV GAGDV AVS+KG
Sbjct:   70 FNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKG 188          

HSP 2 Score: 34.2686 bits (77), Expect = 1.095e-40
Identity = 15/34 (44.12%), Postives = 16/34 (47.06%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW+   ATFY              YGNLYS GYG
Sbjct:   26 GWSSGSATFYGGSDASGTMGGACGYGNLYSAGYG 59          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.425e-40
Identity = 65/140 (46.43%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G   ++++     F+ G  CG C+ I C     P+WC+PG ++ +TAT+FC          GGWCNPP+ HFD++QPA E+I  Y AGI+PV Y+RVPC + GG+RFTINGH YF LVL+TNV  AG ++++ + G
Sbjct:   65 LYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMG 204          

HSP 2 Score: 36.965 bits (84), Expect = 1.425e-40
Identity = 16/33 (48.48%), Postives = 17/33 (51.52%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W  AHATFY              YGNLYS+GYG
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYG 71          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 4.105e-40
Identity = 66/140 (47.14%), Postives = 93/140 (66.43%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G   ++++     F+ G  CG C+ I C     P+WCRPG ++ +TAT+FC          GGWCNPP+ HFD++QPA E+I  Y+AGI+PV Y+RVPC + GG+RFTINGH YFNLVL+TNV   G ++++ + G
Sbjct:   78 LYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMG 217          

HSP 2 Score: 35.039 bits (79), Expect = 4.105e-40
Identity = 15/33 (45.45%), Postives = 17/33 (51.52%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W  AHATFY              YG+LYS+GYG
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYG 84          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.354e-40
Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G   ++++     F+ G  CG C+ I C     P+WC+PG ++ +TAT+FC          GGWCNPP+ HFD++QPA E+I  Y AGI+PV Y+RVPC + GG+RFTINGH YFNLVL+TNV   G ++++ I G
Sbjct:   60 LYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMG 199          

HSP 2 Score: 35.039 bits (79), Expect = 5.354e-40
Identity = 15/33 (45.45%), Postives = 17/33 (51.52%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W  AHATFY              YG+LYS+GYG
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYG 66          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.542e-39
Identity = 67/140 (47.86%), Postives = 93/140 (66.43%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G   ++++     F+ G  CG C+ I C     P+WC+PG ++ VTAT+FC          GGWCNPP+ HFD++QPA E+I  Y+AGI+PV Y+RVPC + GG+RFTINGH YFNLVL+TNV   G ++++ I G
Sbjct:   76 LYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMG 215          

HSP 2 Score: 31.5722 bits (70), Expect = 1.542e-39
Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W  AHATFY              Y +LYS+GYG
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYG 82          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.411e-39
Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L ++G   + ++     F+ G  CGAC+ I CVNDP+WC PGS+ +TAT+FC          G WCNPPQ+HFDLS P   +IAQYKAG+VPV YRR+ C R GG++F   G+ YF ++L  NV GAGD++ + +KG
Sbjct:   74 LFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKG 208          

HSP 2 Score: 31.187 bits (69), Expect = 3.411e-39
Identity = 13/33 (39.39%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W DA ATFY              YG+L+ +GYG
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYG 80          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.413e-39
Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC-VNDPRWCRPG--SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G +CGAC+ I C  +  +WC+PG  SI +TAT+ C          GGWCNPP+QHFD+SQPA E IA Y+AGIVPV+Y+RVPC R+GGIRF I+GH YF LV +TNV G+G V  +SIKG
Sbjct:   71 FNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKG 193          

HSP 2 Score: 27.7202 bits (60), Expect = 3.413e-39
Identity = 13/30 (43.33%), Postives = 14/30 (46.67%), Query Frame = 3
Query:  129 AHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            A ATFY              YGNLY+ GYG
Sbjct:   31 AFATFYGGKDGSGTMGGACGYGNLYNAGYG 60          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.790e-39
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F  G  CGAC+++KCV+ P  C+ G+  + VTAT+ C          GGWCNPP++HFDLS PA  QIAQ KAGIVP+SYRRVPC + GGIR+TI G+ YFNLV+++NV GAGDV  +S+KG
Sbjct:   85 FGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKG 206          

HSP 2 Score: 26.5646 bits (57), Expect = 5.790e-39
Identity = 12/33 (36.36%), Postives = 13/33 (39.39%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W  AHATFY              Y +   EGYG
Sbjct:   42 WKQAHATFYGGRDGSGTLDGACGYKDTSKEGYG 74          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 7.546e-39
Identity = 68/140 (48.57%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVN--DPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G   + ++     F  G  CG C+ + C    DPRWCR G S+ VTAT+FC          GGWCNPP+ HFD++QPA E+I  Y+ GIVPV++RRVPC R GG+RFT+ G  YF LVL+TNV  AG VR++ ++G
Sbjct:   60 LYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRG 199          

HSP 2 Score: 33.4982 bits (75), Expect = 7.546e-39
Identity = 14/34 (41.18%), Postives = 17/34 (50.00%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW+   ATFY              YGNLY++GYG
Sbjct:   33 GWSKGTATFYGGSDASGTMGGACGYGNLYTQGYG 66          
The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP13_ORYSJ4.946e-4147.14Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ORYSJ1.095e-4057.50Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ1.425e-4046.43Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ4.105e-4047.14Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ5.354e-4047.14Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ1.542e-3947.86Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ARATH3.411e-3948.91Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXPA3_ORYSJ3.413e-3957.72Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP32_ORYSJ5.790e-3957.38Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ7.546e-3948.57Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bp
GACGCCTCTCTTTCTCTCTTAAAAAGATACGCAAGCAAAAGGGTTTCAGG
AACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTC
ATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTG
GGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTA
TACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCGCTTTT
CACATTGGCATGATCTGTGGGGCTTGTTTTGATATCAAGTGTGTTAATGA
CCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACTGATTTTT
GCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCT
CCCCAGCAACATTTTGACCTCTCTCAGCCTGCGCTTGAACAAATTGCTCA
GTACAAAGCTGGTATAGTACCTGTGTCTTACAGAAGGGTTCCATGCACTA
GGAACGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTA
GTCCTAATCACAAACGTCCGAGGCGCTGGTGATGTGCGTGCTGTTTCAAT
CAAAGGGT
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