CN188976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 4.946e-41 Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKC--VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G + ++ F+ G+ CG C+ + C D WC+PG S+ +TAT+FC GGWCNPP+ HFD++QPA E+I Y+ GI+PV Y+RVPC + GG+RFTINGH YF LVL+TNV AG ++A+ +KG Sbjct: 60 LYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKG 199 HSP 2 Score: 38.1206 bits (87), Expect = 4.946e-41 Identity = 16/34 (47.06%), Postives = 18/34 (52.94%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW AHATFY YGNLY++GYG Sbjct: 33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYG 66
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 1.095e-40 Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CGACF+++C C G++ VTAT+ C GGWCNPP+ HFD+++PA +IAQ +AG+VPV YRRV C + GGIRFTI GHSYFNLVL+TNV GAGDV AVS+KG Sbjct: 70 FNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKG 188 HSP 2 Score: 34.2686 bits (77), Expect = 1.095e-40 Identity = 15/34 (44.12%), Postives = 16/34 (47.06%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW+ ATFY YGNLYS GYG Sbjct: 26 GWSSGSATFYGGSDASGTMGGACGYGNLYSAGYG 59
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 1.425e-40 Identity = 65/140 (46.43%), Postives = 92/140 (65.71%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G ++++ F+ G CG C+ I C P+WC+PG ++ +TAT+FC GGWCNPP+ HFD++QPA E+I Y AGI+PV Y+RVPC + GG+RFTINGH YF LVL+TNV AG ++++ + G Sbjct: 65 LYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMG 204 HSP 2 Score: 36.965 bits (84), Expect = 1.425e-40 Identity = 16/33 (48.48%), Postives = 17/33 (51.52%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W AHATFY YGNLYS+GYG Sbjct: 39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYG 71
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 4.105e-40 Identity = 66/140 (47.14%), Postives = 93/140 (66.43%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G ++++ F+ G CG C+ I C P+WCRPG ++ +TAT+FC GGWCNPP+ HFD++QPA E+I Y+AGI+PV Y+RVPC + GG+RFTINGH YFNLVL+TNV G ++++ + G Sbjct: 78 LYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMG 217 HSP 2 Score: 35.039 bits (79), Expect = 4.105e-40 Identity = 15/33 (45.45%), Postives = 17/33 (51.52%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W AHATFY YG+LYS+GYG Sbjct: 52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYG 84
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 5.354e-40 Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G ++++ F+ G CG C+ I C P+WC+PG ++ +TAT+FC GGWCNPP+ HFD++QPA E+I Y AGI+PV Y+RVPC + GG+RFTINGH YFNLVL+TNV G ++++ I G Sbjct: 60 LYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMG 199 HSP 2 Score: 35.039 bits (79), Expect = 5.354e-40 Identity = 15/33 (45.45%), Postives = 17/33 (51.52%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W AHATFY YG+LYS+GYG Sbjct: 34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYG 66
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 1.542e-39 Identity = 67/140 (47.86%), Postives = 93/140 (66.43%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G ++++ F+ G CG C+ I C P+WC+PG ++ VTAT+FC GGWCNPP+ HFD++QPA E+I Y+AGI+PV Y+RVPC + GG+RFTINGH YFNLVL+TNV G ++++ I G Sbjct: 76 LYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMG 215 HSP 2 Score: 31.5722 bits (70), Expect = 1.542e-39 Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W AHATFY Y +LYS+GYG Sbjct: 50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYG 82
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 3.411e-39 Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L ++G + ++ F+ G CGAC+ I CVNDP+WC PGS+ +TAT+FC G WCNPPQ+HFDLS P +IAQYKAG+VPV YRR+ C R GG++F G+ YF ++L NV GAGD++ + +KG Sbjct: 74 LFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKG 208 HSP 2 Score: 31.187 bits (69), Expect = 3.411e-39 Identity = 13/33 (39.39%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W DA ATFY YG+L+ +GYG Sbjct: 48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYG 80
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 3.413e-39 Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC-VNDPRWCRPG--SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G +CGAC+ I C + +WC+PG SI +TAT+ C GGWCNPP+QHFD+SQPA E IA Y+AGIVPV+Y+RVPC R+GGIRF I+GH YF LV +TNV G+G V +SIKG Sbjct: 71 FNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKG 193 HSP 2 Score: 27.7202 bits (60), Expect = 3.413e-39 Identity = 13/30 (43.33%), Postives = 14/30 (46.67%), Query Frame = 3 Query: 129 AHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 A ATFY YGNLY+ GYG Sbjct: 31 AFATFYGGKDGSGTMGGACGYGNLYNAGYG 60
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 5.790e-39 Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F G CGAC+++KCV+ P C+ G+ + VTAT+ C GGWCNPP++HFDLS PA QIAQ KAGIVP+SYRRVPC + GGIR+TI G+ YFNLV+++NV GAGDV +S+KG Sbjct: 85 FGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKG 206 HSP 2 Score: 26.5646 bits (57), Expect = 5.790e-39 Identity = 12/33 (36.36%), Postives = 13/33 (39.39%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W AHATFY Y + EGYG Sbjct: 42 WKQAHATFYGGRDGSGTLDGACGYKDTSKEGYG 74
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 7.546e-39 Identity = 68/140 (48.57%), Postives = 90/140 (64.29%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVN--DPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G + ++ F G CG C+ + C DPRWCR G S+ VTAT+FC GGWCNPP+ HFD++QPA E+I Y+ GIVPV++RRVPC R GG+RFT+ G YF LVL+TNV AG VR++ ++G Sbjct: 60 LYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRG 199 HSP 2 Score: 33.4982 bits (75), Expect = 7.546e-39 Identity = 14/34 (41.18%), Postives = 17/34 (50.00%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW+ ATFY YGNLY++GYG Sbjct: 33 GWSKGTATFYGGSDASGTMGGACGYGNLYTQGYG 66 The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bpback to top |