CN188976

Overview
NameCN188976
Unique NameCN188976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12023 contig Csv1_Contig12023:29..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.241e-35
Identity = 68/140 (48.57%), Postives = 88/140 (62.86%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPGS-IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G    +++     F+ G  CG C+ I C     P+WC+ G+ + VTAT+ C          GGWCNPP+ HFD+SQPA EQI  Y+AGIVPV Y+RV C R GG+RFT+ G +YF LVLITNV G+G V +  IKG
Sbjct:   54 LYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKG 193          

HSP 2 Score: 32.3426 bits (72), Expect = 1.241e-35
Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W+ A ATFY              YGNLY +GYG
Sbjct:   28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYG 60          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.106e-35
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVN--DPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C +  D RWC  G S+ +TAT+FC          GGWCNPP +HFD++QPA E+I  Y+ GIVPV ++RV C + GG+RF ING  YF LV I NV GAG +++VSIKG
Sbjct:   69 FNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKG 191          

HSP 2 Score: 32.7278 bits (73), Expect = 2.106e-35
Identity = 15/34 (44.12%), Postives = 17/34 (50.00%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G T+ HATFY              YG+LYS GYG
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYG 58          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 2.742e-35
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVN--DPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C +  +PRWC  G ++ +T T+ C          GGWCNPP+ HFD+++PA  QI  YKAGIVPV Y+RVPC + GG+RFT+ G +YF LVLI+NV G+G +++V +KG
Sbjct:   75 FNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKG 197          

HSP 2 Score: 31.5722 bits (70), Expect = 2.742e-35
Identity = 14/34 (41.18%), Postives = 15/34 (44.12%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW+   ATFY              YGNLY  GYG
Sbjct:   31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYG 64          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.652e-35
Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC--VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C    D R+C  G S+ +TAT+ C          GGWCNPP+QHFD+++PA  +I  Y  GIVPV Y+RVPC + GG+RFTING  YF LVL++NV G G +++VSIKG
Sbjct:   77 FNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKG 199          

HSP 2 Score: 33.113 bits (74), Expect = 4.652e-35
Identity = 15/34 (44.12%), Postives = 16/34 (47.06%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW  A ATFY              YG+LYS GYG
Sbjct:   33 GWNKAFATFYGGSDASGTMGGACGYGDLYSTGYG 66          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 6.061e-35
Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC--VNDPRWCRPGS-IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C     P+WCR G+ + +TAT+ C          GGWCNPP+ HFD+++PA  QI  YKAGI+PV Y++V C R GGIRFT+ G ++F LVL++NV G+G VR+VS+KG
Sbjct:   70 FNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKG 192          

HSP 2 Score: 31.9574 bits (71), Expect = 6.061e-35
Identity = 14/34 (41.18%), Postives = 15/34 (44.12%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW    ATFY              YGNLY+ GYG
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYG 59          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.538e-34
Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG CF I C   P      S  VTAT+ C          GGWCNPP+ HFD+++PA  ++A ++AGI+PV+YRRVPC R+GG+RF   G+SY+ L+ + NV GAGD++++++KG
Sbjct:   80 FNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKG 199          

HSP 2 Score: 32.7278 bits (73), Expect = 6.538e-34
Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W  AHATFY              YGNL++ GYG
Sbjct:   37 WRYAHATFYGDETGGETMGGACGYGNLFNSGYG 69          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.450e-33
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F  G ICGACF+++CV+D RWC PG SI +TAT+FC          GG CNPP +HF L   A E+IA +KAG +PV YRR+ C + G +RFT++G   F  VLITNV G+GD+ AV IKG
Sbjct:   83 FERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKG 203          

HSP 2 Score: 25.409 bits (54), Expect = 2.450e-33
Identity = 11/33 (33.33%), Postives = 13/33 (39.39%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W  A AT+Y              YG+L   GYG
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYG 72          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.158e-33
Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG CF +KCV+ P  C  GS    VTAT+ C          GGWCNPP+ HFDL++PA  +IA +KAGI+PVSYRRV C + GGIRF   G+ Y+ LV + NV G GD++ +++KG
Sbjct:   74 FNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKG 194          

HSP 2 Score: 31.5722 bits (70), Expect = 4.158e-33
Identity = 14/36 (38.89%), Postives = 15/36 (41.67%), Query Frame = 3
Query:  111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G  W  A ATFY              YGN+Y  GYG
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYG 63          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.132e-31
Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F  G  CG C+++KCV+D ++C PG SI VTAT+FC          GG CNPP  HF L   + E+IA +KAG++P+ YRRV C R+GG+RF + G S+F  VLI+NV GAGDVR+V IKG
Sbjct:   75 FERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKG 195          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.288e-31
Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVND--PRWCRPGS-IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C  D  P  CR G+ I VT T+FC          GGWCN  + HFD+SQPA E I  Y AGIVP+ Y++V C R+GG+RFTI G +YF LVL+TN+ G+G + ++S+KG
Sbjct:   66 FNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKG 186          

HSP 2 Score: 32.7278 bits (73), Expect = 6.288e-31
Identity = 14/34 (41.18%), Postives = 15/34 (44.12%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW    ATFY              YGNLY +GYG
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYG 55          
The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP31_ORYSJ1.241e-3548.57Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH2.106e-3552.03Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP15_ORYSJ2.742e-3549.59Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ4.652e-3551.22Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ORYSJ6.061e-3550.41Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH6.538e-3446.67Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP13_ARATH2.450e-3353.72Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP18_ARATH4.158e-3350.00Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP10_ORYSJ1.132e-3152.89Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ6.288e-3149.59Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bp
GACGCCTCTCTTTCTCTCTTAAAAAGATACGCAAGCAAAAGGGTTTCAGG
AACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTC
ATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTG
GGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTA
TACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCGCTTTT
CACATTGGCATGATCTGTGGGGCTTGTTTTGATATCAAGTGTGTTAATGA
CCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACTGATTTTT
GCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCT
CCCCAGCAACATTTTGACCTCTCTCAGCCTGCGCTTGAACAAATTGCTCA
GTACAAAGCTGGTATAGTACCTGTGTCTTACAGAAGGGTTCCATGCACTA
GGAACGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTA
GTCCTAATCACAAACGTCCGAGGCGCTGGTGATGTGCGTGCTGTTTCAAT
CAAAGGGT
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