CN188976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.241e-35 Identity = 68/140 (48.57%), Postives = 88/140 (62.86%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVND--PRWCRPGS-IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G +++ F+ G CG C+ I C P+WC+ G+ + VTAT+ C GGWCNPP+ HFD+SQPA EQI Y+AGIVPV Y+RV C R GG+RFT+ G +YF LVLITNV G+G V + IKG Sbjct: 54 LYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKG 193 HSP 2 Score: 32.3426 bits (72), Expect = 1.241e-35 Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W+ A ATFY YGNLY +GYG Sbjct: 28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYG 60
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.106e-35 Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVN--DPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C + D RWC G S+ +TAT+FC GGWCNPP +HFD++QPA E+I Y+ GIVPV ++RV C + GG+RF ING YF LV I NV GAG +++VSIKG Sbjct: 69 FNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKG 191 HSP 2 Score: 32.7278 bits (73), Expect = 2.106e-35 Identity = 15/34 (44.12%), Postives = 17/34 (50.00%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 G T+ HATFY YG+LYS GYG Sbjct: 25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYG 58
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 2.742e-35 Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVN--DPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C + +PRWC G ++ +T T+ C GGWCNPP+ HFD+++PA QI YKAGIVPV Y+RVPC + GG+RFT+ G +YF LVLI+NV G+G +++V +KG Sbjct: 75 FNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKG 197 HSP 2 Score: 31.5722 bits (70), Expect = 2.742e-35 Identity = 14/34 (41.18%), Postives = 15/34 (44.12%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW+ ATFY YGNLY GYG Sbjct: 31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYG 64
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 4.652e-35 Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC--VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C D R+C G S+ +TAT+ C GGWCNPP+QHFD+++PA +I Y GIVPV Y+RVPC + GG+RFTING YF LVL++NV G G +++VSIKG Sbjct: 77 FNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKG 199 HSP 2 Score: 33.113 bits (74), Expect = 4.652e-35 Identity = 15/34 (44.12%), Postives = 16/34 (47.06%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW A ATFY YG+LYS GYG Sbjct: 33 GWNKAFATFYGGSDASGTMGGACGYGDLYSTGYG 66
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 6.061e-35 Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC--VNDPRWCRPGS-IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C P+WCR G+ + +TAT+ C GGWCNPP+ HFD+++PA QI YKAGI+PV Y++V C R GGIRFT+ G ++F LVL++NV G+G VR+VS+KG Sbjct: 70 FNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKG 192 HSP 2 Score: 31.9574 bits (71), Expect = 6.061e-35 Identity = 14/34 (41.18%), Postives = 15/34 (44.12%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW ATFY YGNLY+ GYG Sbjct: 26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYG 59
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.538e-34 Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG CF I C P S VTAT+ C GGWCNPP+ HFD+++PA ++A ++AGI+PV+YRRVPC R+GG+RF G+SY+ L+ + NV GAGD++++++KG Sbjct: 80 FNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKG 199 HSP 2 Score: 32.7278 bits (73), Expect = 6.538e-34 Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W AHATFY YGNL++ GYG Sbjct: 37 WRYAHATFYGDETGGETMGGACGYGNLFNSGYG 69
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 2.450e-33 Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F G ICGACF+++CV+D RWC PG SI +TAT+FC GG CNPP +HF L A E+IA +KAG +PV YRR+ C + G +RFT++G F VLITNV G+GD+ AV IKG Sbjct: 83 FERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKG 203 HSP 2 Score: 25.409 bits (54), Expect = 2.450e-33 Identity = 11/33 (33.33%), Postives = 13/33 (39.39%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W A AT+Y YG+L GYG Sbjct: 40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYG 72
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 4.158e-33 Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG CF +KCV+ P C GS VTAT+ C GGWCNPP+ HFDL++PA +IA +KAGI+PVSYRRV C + GGIRF G+ Y+ LV + NV G GD++ +++KG Sbjct: 74 FNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKG 194 HSP 2 Score: 31.5722 bits (70), Expect = 4.158e-33 Identity = 14/36 (38.89%), Postives = 15/36 (41.67%), Query Frame = 3 Query: 111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 G W A ATFY YGN+Y GYG Sbjct: 28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYG 63
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.132e-31 Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F G CG C+++KCV+D ++C PG SI VTAT+FC GG CNPP HF L + E+IA +KAG++P+ YRRV C R+GG+RF + G S+F VLI+NV GAGDVR+V IKG Sbjct: 75 FERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKG 195
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 6.288e-31 Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVND--PRWCRPGS-IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C D P CR G+ I VT T+FC GGWCN + HFD+SQPA E I Y AGIVP+ Y++V C R+GG+RFTI G +YF LVL+TN+ G+G + ++S+KG Sbjct: 66 FNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKG 186 HSP 2 Score: 32.7278 bits (73), Expect = 6.288e-31 Identity = 14/34 (41.18%), Postives = 15/34 (44.12%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW ATFY YGNLY +GYG Sbjct: 22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYG 55 The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bpback to top |