CN188971

Overview
NameCN188971
Unique NameCN188971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:21..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 234
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 234
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 234
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 234
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 234
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73
[Close]
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALE 279
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86
[Close]
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALE 279
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86
The following BLAST results are available for this feature:
BLAST of CN188971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_BOVIN4.453e-1554.05Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA4.453e-1554.05Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB4.453e-1554.05Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE4.453e-1554.05Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK4.453e-1554.05Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN1.692e-1446.07Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE6.431e-1444.94Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188971 ID=CN188971; Name=CN188971; organism=Citrus sinensis; type=EST; length=715bp
GAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAA
CAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGA
AGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATC
ATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCAT
GGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAAC
CGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATAT
CTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCT
CCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTG
AAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAG
TACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAG
CGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCG
CTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAA
TTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACC
TCAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAA
TTGGATACCAGCCTG
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