CN188971

Overview
NameCN188971
Unique NameCN188971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.060e-35
Identity = 85/180 (47.22%), Postives = 116/180 (64.44%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAA 552
            M RGR ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL  IR  +T+ +   + +L+ KE+ L + N+ L+ +   L  AA
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAA 178          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.609e-35
Identity = 88/185 (47.57%), Postives = 121/185 (65.41%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQ 567
            M RG+ E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVAL+IFS R KLYEF SSSS+  T+ERYQ+        N   R      ++ E   L  + E L+ S+R LLGE +   + +EL+ LE QLD SL +IR+ + Q + + + +L+ +E+ L + NK LK++ + +  A  A  Q
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSSIAATIERYQR--RIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIASSQ 182          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.284e-34
Identity = 81/175 (46.29%), Postives = 120/175 (68.57%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 528
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF +SS+M  T++RY +      +  VS +   E + Q    E   +  + E L+ S+R LLGE +G  + +EL+ +E+QL+ S+K IR+ +TQ   + + +L+ KE+ L+  N+ L ++
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF-ASSNMQDTIDRYLR----HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 78/178 (43.82%), Postives = 116/178 (65.17%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 543
            MGRG++ ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFS+ G+LYE+ SS+SM   ++RY K      E    A    EL   Q+E   L+ +   LQ + R L+GE+L  LN KEL+SLE QL++SL+ +R+ +   ++D + EL  K  L+ + N  L ++   +R
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGK---SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIR 174          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.736e-33
Identity = 84/175 (48.00%), Postives = 121/175 (69.14%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQ---KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 528
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF S+S+  KT+ERY+   K N G    N + ++ +E   + +   L  + EAL+  +R LLGE+L   + +EL SLE +L+ SL  IR  +T+ + + + +L+ KE  L + N+ L+++
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ-KTIERYRTYTKENIG----NKTVQQDIE-QVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 73/160 (45.62%), Postives = 114/160 (71.25%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMVKTLERYQKCNYGAPEPNVSAR-EALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 486
            MGRG+V+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS +G L+ + SS ++M + LE+Y +    +   NV      LE S   +++KL+ R EAL++SQRNL+G+EL  L  ++++ LE Q+D SL  IRS + + +++  T L+ K
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKK 160          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 75/175 (42.86%), Postives = 116/175 (66.29%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQR-SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTM 534
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K N         A E      QQE  KL+ +  +LQ  + R ++G+ +  ++ ++L+ +E +L+  + +IR+ + + +   +  +Q +E  L   N  L+ + +
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKSTVERYKKANSDTSNSGTVA-EVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVV 173          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 81/177 (45.76%), Postives = 112/177 (63.28%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 543
            MGRG++E+KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  GKL+EF SS+SM KTL RY      +  P ++ +   +    +  L LK     LQ    ++ G+ L  L+ KEL+ LE+QL+ SL  +R  +   +   L E + KEQ     N+TL+++   LR
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDL-LKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQELR 175          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.990e-31
Identity = 81/214 (37.85%), Postives = 129/214 (60.28%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGL--QLMEGYQVNTLQLNPSAEDCGYGLKP 642
            MGRG++ +KRI+N +NRQVTF+KRR GL+KKA EL++LCDA+V LI+FS  G+LY+F SSSSM   +ERYQ+    A E +      +  +   Q+E   L+ + + L  + R LLGEE+     ++L+ L+ Q++MSL  IR+ + Q + + + +L  K  L+ + N  L+++   + H     L  +L  G   ++ Q+  S++D G    P
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQE----AGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKK-FNIAHQRNIELHKKLNSGESTSSEQVTRSSKDPGESSTP 208          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.394e-31
Identity = 74/158 (46.84%), Postives = 107/158 (67.72%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 486
            MGRG++E+KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+  +LY+F +SSSM   +ERY +     P   ++A    +L  QQE   L+ +   LQ   R LLG++L  L+ ++L++LE +L+MSLK IR  +   M+D + EL  K
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDF-ASSSMKSIIERYNETKED-PHQTMNASSEAKL-WQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
The following BLAST results are available for this feature:
BLAST of CN188971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD56_ORYSI5.060e-3547.22MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL19_ARATH6.609e-3547.57Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
SOC1_ARATH4.284e-3446.29MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD27_ORYSJ1.246e-3343.82MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD50_ORYSJ4.736e-3348.00MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD20_ORYSJ8.079e-3345.63MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MADS3_ORYSJ1.055e-3242.86MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AGL15_BRANA5.236e-3245.76Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MAD25_ORYSJ1.990e-3137.85MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MAD23_ORYSJ3.394e-3146.84MADS-box transcription factor 23 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001B22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188971 ID=CN188971; Name=CN188971; organism=Citrus sinensis; type=EST; length=715bp
GAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAA
CAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGA
AGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATC
ATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCAT
GGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAAC
CGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATAT
CTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCT
CCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTG
AAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAG
TACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAG
CGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCG
CTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAA
TTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACC
TCAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAA
TTGGATACCAGCCTG
back to top