CN188971

Overview
NameCN188971
Unique NameCN188971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.394e-31
Identity = 75/178 (42.13%), Postives = 109/178 (61.24%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKC---NYGAPEPNVSAREALE---LSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 528
            M RG+++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +  +M   +++Y KC     G+     +A+E L+   L  + E   LK   E LQ+    + G   G +N +EL  LE+ L+  + QIRS +   ML  +  L++KE +L   NK L ++
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEK 178          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.433e-31
Identity = 75/177 (42.37%), Postives = 111/177 (62.71%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 540
            MGRG++ ++RI++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFS+ GKLY+F +SSSM   ++RY K      E       A E+   Q+E   L+    ALQ + R ++GE+L  L+  EL SLE Q+++SL+ IR  + Q +   + EL  K  L+ + N  L ++   +
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDF-ASSSMKSVIDRYNKSKI---EQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRI 173          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.561e-31
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 543
            MGRG++E+KRIEN  +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS  GKL+E+ SS+ M +TL RY   N+ +   + +  +  E+        LK +   LQ     L G+ L PL  KEL+SLE+QL  +L  +R  + + + + L E + KEQ     N+TL+++   LR
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRYG--NHQSSSASKAEEDCAEVDI------LKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQELR 168          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.875e-31
Identity = 74/173 (42.77%), Postives = 113/173 (65.32%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQ-KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 528
            M RG+V+++RIEN ++RQVTF KRR GLLKKA ELSVLCDA+V +IIFS++GKL+E  ++ +M   +ERYQ     G  EP    R+ +   ++Q    L+   + LQR  R+  G   G +   +L +LE+ L++ + QIR+T+ Q M   +  L++KE +L EAN+ L+++
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQRQQV---AEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEK 170          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.200e-30
Identity = 87/246 (35.37%), Postives = 133/246 (54.07%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMVKTLERYQKC-NYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAG-LQLMEGYQVNTLQLNPS------------------------------AEDCGYGLKPAQP 651
            MGRG++E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS + S+ + +E+YQ   N    E N   +  LE++      ++K   E L+   R   G++L  L   ++  LE+QL+ S+ ++R+ + Q +   L  L+ KEQ+L + N  L +     + AA  G ++L E   +  LQ  P+                              A+D G+ L+P QP
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEEINHDQQILLEMT------RMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQAALTGEVKLGEMAPLAMLQPPPAFAHSATAYYGGESSSSGTALQLMSAAPQLHADDLGFRLQPTQP 240          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.753e-30
Identity = 73/172 (42.44%), Postives = 109/172 (63.37%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 525
            MGRG++ ++RI+N  +RQVTF+KRRNGLLKKA ELS+LCDAEV L++FS+ G+LYEF SS++M   ++RY      A E  +      E+   Q+E   L+ +   LQ S + L+GEEL  L  ++L+ LE +L++SL+ IR  +   +   + EL  K  L+ + N  L +
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF-SSTNMKTVIDRYT----NAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSR 167          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.401e-30
Identity = 76/177 (42.94%), Postives = 111/177 (62.71%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 540
            MGRG++ +++I++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFSN  KLY+F +SSS+  T+ER+   N    E       A E+   Q+E   L+    +LQ + R L G EL  L+ KEL+++E QL+MSL+ IR  R Q + + + EL  K  L+   N  L ++   +
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDF-ASSSVKSTIERF---NTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRI 173          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.419e-29
Identity = 90/268 (33.58%), Postives = 133/268 (49.63%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQ----EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAG-------------LQLM--------EGYQVNTLQLNP------SAEDCGYGLKPAQPQ------GDSFFHALECEPTLQI 702
            MGRG++E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS + S+ + +E YQ          V+     E++  Q    E  +++   E L    R   G++L  L   ++  LE+QL+ S+ ++R+ + Q +   L  L+ KE +L + N  L +      H A  G             L ++        E      LQL P      +A   G+ L+P QP         S FHA      LQ+
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ---------TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENHHQAAVGGGDVKAMVEMAPVLSMLTAAPAYYGEESSSTALQLTPPLHAVDAAAAAGFRLQPTQPNLQDPGCSSSSFHAAAAGHGLQL 259          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.419e-29
Identity = 75/194 (38.66%), Postives = 113/194 (58.25%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRH-AAFAGLQLMEGYQVN 591
            MGR ++E+KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S  GKLY F S  ++VK L+RY K +         A +   L  Q + L   + YE L+     L+G  +  ++   L  LE  L+ +L   R+ +T+ ML  +  L+ KE++L E N+ L  +     H  A A +++    Q++
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQH---------ADDLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEMEMSPAGQIS 185          
BLAST of CN188971 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 75/175 (42.86%), Postives = 109/175 (62.29%), Query Frame = 1
Query:   13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTM 534
            MGRG++E+KRIENK +RQVTF+KRR GLLKK +ELSVLCDA++ LIIFS++GKL+E+CS   SM + + RY +   GA  P    R  L      E  K++     LQ S +   G++L     +EL  LE+QL+ +L +IR+ + + M   +  L+  E++L + N  + Q  M
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTT-GASLPVEDNRVQL----YDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM 173          
The following BLAST results are available for this feature:
BLAST of CN188971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL12_ARATH3.394e-3142.13Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
AGL21_ARATH4.433e-3142.37Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
AGL15_ARATH7.561e-3145.20Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD33_ORYSJ9.875e-3142.77MADS-box transcription factor 33 OS=Oryza sativa s... [more]
M17_MAIZE2.200e-3035.37MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
MAD57_ORYSJ3.753e-3042.44MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL17_ARATH6.401e-3042.94Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MAD29_ORYSJ5.419e-2933.58MADS-box transcription factor 29 OS=Oryza sativa s... [more]
FLC_ARATH5.419e-2938.66MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
FBP24_PETHY7.077e-2942.86MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188971 ID=CN188971; Name=CN188971; organism=Citrus sinensis; type=EST; length=715bp
GAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAA
CAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGA
AGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATC
ATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCAT
GGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAAC
CGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATAT
CTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCT
CCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTG
AAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAG
TACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAG
CGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCG
CTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAA
TTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACC
TCAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAA
TTGGATACCAGCCTG
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