CN188970
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18 Identity = 65/149 (43.62%), Postives = 82/149 (55.03%), Query Frame = -1 Query: 266 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDSFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 682 LG L KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++ L E Q++ A GY ++ P G+ FFH+LE EPTLQIG+ P S VTA +M WLP Sbjct: 119 LGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15 Identity = 54/142 (38.03%), Postives = 73/142 (51.41%), Query Frame = -1 Query: 269 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNYMQGWL 682 LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK + L S QP GD FF L C LQIGY A D ++ T+ +++ + QGW+ Sbjct: 116 LGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK------------------------LEESCASFRPNWDVRQP-GDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14 Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = -1 Query: 272 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 682 LGPL+ KEL+ LE+QL+ SL Q R +TQ M++ + +L+ KE+ L E NK LK + ++ + + + T+ G + AQP D ++CEPTLQIGY + A+P S G NN++ GW Sbjct: 117 LGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = -1 Query: 335 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ 682 L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK++ +Q G + L+ S +D G ++ + HA+ C+P+L IGYQ Sbjct: 118 LVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = -1 Query: 335 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ 682 L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK++ +Q G + L+ S +D G ++ + HA+ C+P+L IGYQ Sbjct: 118 LVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = -1 Query: 269 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP--QGDSFFHALECEPTLQI----GYQPADPISVVTAGPSLNNYMQGWL 682 L ++ ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++ L + A Q G Q + G + P Q FF L+ LQ+ + PA+ + T ++N + GW+ Sbjct: 117 LSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK---LEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = -1 Query: 269 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT----MTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 682 LGPL+ KEL+ LE+QL+ +L Q R +TQ M++ + EL+ KE+ L E N+ LK + T + A +G V G QP S A++ EPTLQIGY PA+ ++ + NN+M GW+ Sbjct: 115 LGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVEN------------GAAYVQPPPHS--AAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249 The following BLAST results are available for this feature:
BLAST of CN188970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188970 ID=CN188970; Name=CN188970; organism=Citrus sinensis; type=EST; length=682bpback to top |