CN188970

Overview
NameCN188970
Unique NameCN188970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:384..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 65/149 (43.62%), Postives = 82/149 (55.03%), Query Frame = -1
Query:  266 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDSFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 682
            LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++             L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:  119 LGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 54/142 (38.03%), Postives = 73/142 (51.41%), Query Frame = -1
Query:  269 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNYMQGWL 682
            LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +                        L  S           QP GD FF    L C   LQIGY  A  D ++  T+  +++ + QGW+
Sbjct:  116 LGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK------------------------LEESCASFRPNWDVRQP-GDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232          
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = -1
Query:  272 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 682
            LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +      ++     + + +   T+         G  +  AQP  D     ++CEPTLQIGY      + A+P S    G   NN++ GW
Sbjct:  117 LGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = -1
Query:  335 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ 682
            L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++           +Q   G  +    L+ S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  118 LVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = -1
Query:  335 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ 682
            L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++           +Q   G  +    L+ S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  118 LVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = -1
Query:  269 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP--QGDSFFHALECEPTLQI----GYQPADPISVVTAGPSLNNYMQGWL 682
            L  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++   L  +  A  Q   G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +  GW+
Sbjct:  117 LSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK---LEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of CN188970 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = -1
Query:  269 LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT----MTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 682
            LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +      T  + A       +G  V              G    QP   S   A++ EPTLQIGY     PA+  ++        + NN+M GW+
Sbjct:  115 LGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVEN------------GAAYVQPPPHS--AAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249          
The following BLAST results are available for this feature:
BLAST of CN188970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
MADS8_ORYSJ8.851e-1843.62MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA3.148e-1538.03MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MAD17_ORYSJ5.937e-1434.97MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS5_ORYSJ2.112e-1137.93MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI2.112e-1137.93MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL3_ARATH3.602e-1131.94Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MADS6_ORYSJ4.704e-1133.56MADS-box transcription factor 6 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188970 ID=CN188970; Name=CN188970; organism=Citrus sinensis; type=EST; length=682bp
TTTTTTTTTTTTTTTTTATTCTCAAACAAGGCTTTGTTAAACAAAGATAA
GCGCGGTGATTGAAAATACACGCACACACAACATAGCTATATATCGTCAT
CAGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTT
ATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACA
AAGTTGCTGATTCTTATGGATCAACTACAATACATTGACTGGTAATGCCC
GCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCG
GGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGC
AATGTGGGTTCACATTCCAAGGCGTGAAAGAAGCTATCGCCCTGAGGTTG
AGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAA
GTGTGTTCACTTGGTATCCCTCCATCAACTGCAAACCAGCAAAAGCGGCG
TGCCTTAGCGTCATCGTCCTTTGTTTGAGGGTCTTATTTGCTTCGCTCAG
CAACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAG
TTCTTGTTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGT
GACTCAAGCTCTTTGCTGTTTAGAGGGCCAAG
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