CN188967
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 4.300e-69 Identity = 149/244 (61.07%), Postives = 174/244 (71.31%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSARE-ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDSFFHALE--CEPTLQIGYQP 713 MGRGRVELK +ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS SM +TLERYQK +YG P+ + +E L SS+ EYLKLKAR E LQR+QRNLLGE+LG L KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++ L E Q++ A GY ++ P G+ FFH+LE EPTLQIG+ P Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTP 231
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63 Identity = 139/237 (58.65%), Postives = 162/237 (68.35%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFH--ALECEPTLQIGYQPA 716 MGRGRVELK +ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+S M KTLERYQ+C+YG+ E + ++E SS QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK + L S QP GD FF L C LQIGY A Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKET--ESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK------------------------LEESCASFRPNWDVRQP-GDGFFEPLPLPCNNNLQIGYNEA 210
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.061e-59 Identity = 129/233 (55.36%), Postives = 161/233 (69.10%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ 710 MGRG+VELK +ENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS M KTLERY+ CNY SA ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK++ +Q G + L+ S +D G ++ + HA+ C+P+L IGYQ Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.061e-59 Identity = 129/233 (55.36%), Postives = 161/233 (69.10%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQ 710 MGRG+VELK +ENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS M KTLERY+ CNY SA ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK++ +Q G + L+ S +D G ++ + HA+ C+P+L IGYQ Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2) HSP 1 Score: 218.394 bits (555), Expect = 3.196e-56 Identity = 122/224 (54.46%), Postives = 161/224 (71.88%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA---AFAGLQLMEGYQ--------VNTLQLNPSAEDCGYGLKPAQ 647 MGRG+VELK +ENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS S M +T+++Y+K +Y +PN SA++ + Q+YLKLK+R E LQ SQR+LLGEEL ++ ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++ A +F G E Q +++ Q NP ++ G+ KP Q Sbjct: 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQD--KYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGF-FKPLQ 221
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54 Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527 MGRG+VELK +ENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS M KTLERY+ CNY + + E + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++ Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54 Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527 MGRG+VELK +ENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS M KTLERY+ CNY + + E + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++ Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 2.991e-54 Identity = 126/236 (53.39%), Postives = 155/236 (65.68%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT----MTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGY 707 MGRGRVELK +ENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF S+ + KTLERYQ C Y A + N + E S E KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R +TQ M++ + EL+ KE+ L E N+ LK + T + A +G V G QP S A++ EPTLQIGY Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNNALSET--QSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVEN------------GAAYVQPPPHS--AAMDSEPTLQIGY 219
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 210.305 bits (534), Expect = 8.704e-54 Identity = 120/232 (51.72%), Postives = 153/232 (65.95%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGY 707 MGRGRVELK +ENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF S+ + KTLE+Y C Y A N + S QE +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R +TQ M++ + +L+ KE+ L E NK LK + ++ + + + T+ G + AQP D ++CEPTLQIGY Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIGY 219
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2) HSP 1 Score: 202.601 bits (514), Expect = 1.815e-51 Identity = 102/172 (59.30%), Postives = 137/172 (79.65%), Query Frame = 3 Query: 12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527 MGRG+V L+ +ENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVAL++FS+ G+LY+F SSS+M+KTLERYQ+ Y + + + ++ ++ QEY+ LKA E LQ+SQRNLLGE+L PL + ELE LE Q+ +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++ Sbjct: 1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQ-NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRK 171 The following BLAST results are available for this feature:
BLAST of CN188967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188967 ID=CN188967; Name=CN188967; organism=Citrus sinensis; type=EST; length=736bpback to top |