CN188967

Overview
NameCN188967
Unique NameCN188967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.627e-42
Identity = 90/172 (52.33%), Postives = 125/172 (72.67%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527
            MGRGRV+LK +ENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS +GKL+E+ + S M + LERY++ ++ A    V        S   E+ KLKAR E LQR+Q++ +GE+L  LN KEL++LE QLD +LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSF-AERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.627e-42
Identity = 91/175 (52.00%), Postives = 129/175 (73.71%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527
            MGRGRV+LK +ENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ + S M + LERY +  Y   +    +VS  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QLD ++K IRS + Q M ++++ LQ K++ L + N +L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKK 171          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.643e-42
Identity = 90/175 (51.43%), Postives = 128/175 (73.14%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527
            MGRGRV+LK +ENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVAL+IFS++GKL+E+ + S M K LERY +  Y   +    ++S  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKK 171          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.904e-41
Identity = 92/175 (52.57%), Postives = 127/175 (72.57%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT 530
            MGRG+VE+K +ENKI RQVTF+KR++GLLKKAYELSVLCDAEV+LIIFS  GKLYEF S+  + +T+ERY +C     + N+   + LE +   +QE  KLK +YE+L R+ RNL+GE+L  ++ KEL++LERQL+ +L   R  +TQ M++ + EL+ KE+ L + N  LK  T
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF-SNVGVGRTIERYYRC-----KDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLET 169          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.211e-40
Identity = 88/172 (51.16%), Postives = 123/172 (71.51%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527
            MGRGRV+LK +ENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS +GKL+E+ + S M + LERY++ ++ A +  V        S   E  KLKAR E LQR+++  +GE+L  LN KEL++LE QL  +LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSF-AEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 96/248 (38.71%), Postives = 144/248 (58.06%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNY----GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPT---LQIGYQPADPISVV 734
            MGRG++E+K +ENK +RQVTF KRRNGLLKKAYEL++LCDAE+ALI+FS+RG+LYEF + +S   T+ERY+K +      AP  +V++ +      QQE  K++ + + LQ + R+L+GE +G + +KEL+SLE +L+  + +IRS + + +   +  +Q +E  L   N  L+ +      A     Q              +AED      PA   G S    LE  P     +  YQPA P+S++
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYF----QQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQ--------------AAEDDEMAPAPAVGGGSSSGTELEALPATFDTREYYQPAPPVSML 230          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.744e-38
Identity = 97/244 (39.75%), Postives = 142/244 (58.20%), Query Frame = 3
Query:    6 KKMGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDSFFHALECEPTLQIGYQPADPISVV 734
            KK+GRG++E+K +EN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS RG+LYE+ +++S+  T+ERY+K    A  P  S  EA     QQE  KL+ +   +Q S R+++GE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N       M LR     G +L    Q +++    +  + G      +Q    ++      EP  Q   Q   P+ +V
Sbjct:   14 KKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNP-PSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNN-------MYLRAKIAEGARLNPDQQESSVIQGTTVYESGVSSHDQSQHYNRNYIPVNLLEPNQQFSGQDQPPLQLV 248          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.668e-37
Identity = 81/174 (46.55%), Postives = 120/174 (68.97%), Query Frame = 3
Query:    6 KKMGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527
            +K+GRG++E+K +EN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +++S+  T+ERY+K    +P  + S  EA     QQE  KL+    ++Q++ RN++GE LG L  ++L+ LE +L+  + +IRS + + +   +  +Q KE  L   N+ L+ +
Sbjct:   15 RKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNSVKGTIERYKKACTDSPNTS-SVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAK 186          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.263e-36
Identity = 83/178 (46.63%), Postives = 123/178 (69.10%), Query Frame = 3
Query:    3 LKKMGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSS---QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527
            L+K GRG++E+K +EN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ S++S+  T+ERY+K    A   N +     E+++   QQE  KL+ +  ++Q S R L+GE +G ++ KEL +LE +L+ S+ +IRS + + +   +  +Q +E  L   N+ L+ +
Sbjct:   14 LRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKK----AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAK 186          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.263e-36
Identity = 83/175 (47.43%), Postives = 121/175 (69.14%), Query Frame = 3
Query:    6 KKMGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 527
            KK+GRG++E+K +EN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS RG+LYE+ +++S+  T+ERY+K C+     P ++  EA     QQE  KL+ +   +Q   R++LGE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ +
Sbjct:   14 KKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNPPTIT--EANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSK 185          
The following BLAST results are available for this feature:
BLAST of CN188967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL8_SOLTU2.627e-4252.33Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH2.627e-4252.00Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL7.643e-4251.43Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL13_ARATH2.904e-4152.57Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SOLCO3.211e-4051.16Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD21_ORYSJ7.909e-3938.71MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL1_ARATH8.744e-3839.75Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_PANGI5.668e-3746.55Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_ARATH1.263e-3646.63Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL5_ARATH1.263e-3647.43Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B20_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188967 ID=CN188967; Name=CN188967; organism=Citrus sinensis; type=EST; length=736bp
CGTTGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGCCTTGAGAAC
AAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAA
GAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCA
TTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATG
GTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGC
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCAC
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