CN188967

Overview
NameCN188967
Unique NameCN188967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 69/201 (34.33%), Postives = 109/201 (54.23%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS------MVKTLERYQ----KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLME-GY 581
            MGRG++E+K +EN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFS+ GKL ++C+  +      + + LE+YQ    K  +     ++SA          E  ++K   + +Q   R++ GE+L  L  KEL ++E  L+     +R      M+D     +  E++L + +K L  R          G++ +E GY
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSA----------EIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRVHQQEVELSGGIRELELGY 187          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 66/190 (34.74%), Postives = 105/190 (55.26%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEG 578
            M RG++++K +EN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  KL+E+ S ++  K L ++YQK         V    +     Q+   KL      L+R  R  +GE L  L  +++ +L   +D SLK IR  + + + + +   + K + + E ++ L       R     GL   EG
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKA------VGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEG 184          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.826e-20
Identity = 72/207 (34.78%), Postives = 111/207 (53.62%), Query Frame = 3
Query:   90 GLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYL---KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAA-------------FAGLQLMEGYQV---NTLQLNPSAEDCGYGLKPAQP 650
            GLLKKA EL++LCDA++ +IIFS+ GK++EF S   SM + ++RYQK         +S   A    +QQ Y    ++K   + LQ + R+  GE+L  L   E+  LE+QL++S+ ++RS + Q +   L  L+ KE +L E N+ L  R +   HAA               G+   + +Q    + LQL+P      + L+PAQP
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK---------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNREL-YRVIQDHHAASMEQKMVDPSMLDHFGVFYQDDHQAARSSMLQLSPQLHP--FRLQPAQP 196          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 58/170 (34.12%), Postives = 101/170 (59.41%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 518
            M RG++++K +EN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FS+  KL+E+ S ++  K + + YQ  +    + +V A +   +  Q+   KL      L+   +  LGE L  L+ +EL  LE +++ + K +R  + + + + +   + K +   +  K L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTIS----DVDVWATQYERM--QETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNL 164          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-19
Identity = 58/170 (34.12%), Postives = 98/170 (57.65%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 518
            MGRG++E++ +ENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ S+  KL+ + S   S+ K  + YQK         V          Q+++ K+      L+R     +G +L  L   EL +L+++++ ++ QIR+ +   + +     + K + L E +  L
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIE------GVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL 164          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 55/159 (34.59%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS--SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQH 482
            MGRGR E+K +EN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS  GKLY F S +  S+ + +ERY+   +     ++      EL       K+ +  + L++  R +  ++        LE+LE  L+ +++++RS + + +   +  LQ+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELE------KVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQN 153          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 46/131 (35.11%), Postives = 77/131 (58.78%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERY--------------------QKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 344
            MGR ++++  + ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y                    +K N G   P+  +  AL   ++++Y K+   ++ + +S +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHK 130          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERY 221
            MGR ++ ++ + N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  M K L RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALE 278
            MGR ++++  + ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFS+  KLY++ +S+ M + L +Y +  Y  P  +++ +  +E
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQY-ASTDMDRVLLKYTE--YNEPHESLTNKNIIE 86          
BLAST of CN188967 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 42/87 (48.28%), Postives = 63/87 (72.41%), Query Frame = 3
Query:   12 MGRGRVELKSLENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREA 272
            MGR +++++ + ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
The following BLAST results are available for this feature:
BLAST of CN188967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MADS4_ORYSJ8.785e-2234.33MADS-box transcription factor 4 OS=Oryza sativa su... [more]
DEFA_ANTMA8.785e-2234.74Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AP32_ASAEU2.826e-2034.78MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
AP3_ARATH1.403e-1934.12Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
CMB2_DIACA2.392e-1934.12MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MAD32_ORYSJ5.893e-1834.59MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2C_PIG2.737e-1535.11Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
SRFC_DICDI1.040e-1452.86Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2_DROME1.040e-1444.94Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA1.040e-1448.28Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001B20_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188967 ID=CN188967; Name=CN188967; organism=Citrus sinensis; type=EST; length=736bp
CGTTGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGCCTTGAGAAC
AAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAA
GAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCA
TTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATG
GTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGC
TTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAAT
TGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCT
CAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAAT
TGGATACCAGCCTGCGGACCCAATATCGGTTGTCAC
back to top