CN188966

Overview
NameCN188966
Unique NameCN188966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188966 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = -1 
Query:  525 RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 710
            RNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++
Sbjct:  110 RNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRK 171
[Close]
BLAST of CN188966 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = -1 
Query:  309 RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQPA---DPISVVTAG 710
            ++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++             +L+E  +V   Q+           +P      S F   E  PT  I   PA   + I  V AG
Sbjct:  110 KHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK-------------ELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227
[Close]
BLAST of CN188966 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = -1 
Query:  309 RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQPA---DPISVVTAG 710
            ++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++             +L+E  +V   Q+           +P      S F   E  PT  I   PA   + I  V AG
Sbjct:  110 KHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK-------------ELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227
The following BLAST results are available for this feature:
BLAST of CN188966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
MAD34_ORYSJ2.691e-1256.45MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD14_ORYSJ6.629e-1135.77MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI6.629e-1135.77MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B20_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188966 ID=CN188966; Name=CN188966; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTTTTATTCTCAAACAAGGGCTTTGTTAAATAAAGATA
AGCGGCGGGTGATTGAAAATACACGCACACACAACAATAGCTATATATTC
GTCATCAGTTTTCCCTAAAGTGCAGGATCACTGGTAGAGTTATTATAATA
AATCCTTATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAG
GGATACAAAGTTGCTGATTCTTATGGATCAACTACAATACATTGACTGGT
AATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTC
AGACTCGGGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCC
AATTTGCAATGTGGGTTCACATTCCAAGGCGTGAAAGAAGCTATCGCCCT
GAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTC
AATTGAAGTGTGTTCACTTGGTATCCCTCCATCAACTGCAAACCAGCAAA
AGCGGCGTGCCTTAGCGTCATCGTCCTTTGTTTGAGGGTCTTATTTGCTT
CGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATG
TACTGAGTTCTTGTTGATCTGATCTGCTTCAATGACATATCAAGCTGCCT
TTCAAGTGACTCAAGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAA
GGAGATTCCT
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