CN182268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22 Identity = 51/94 (54.26%), Postives = 61/94 (64.89%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA+PTINSQGNR+ AP + F KEVTK D P S WK WNWRSEGDL+ NGA+FT A+ SSL+ IT+ AG+L CR Sbjct: 331 IGGSANPTINSQGNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGALPCR 424
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21 Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA+PTINSQGNRF+AP + F KEVTK + + EWK WNWRS+GDLM+NGA+FT A+P+S++S +T +G+L CR Sbjct: 342 IGGSANPTINSQGNRFLAPGNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSGAAAPASYARASSLGAKPASVVSMLTYSSGALKCR 435
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.963e-21 Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA+PTINSQGNRF AP + KEVTK D +EW WNWRSE DL+VNGAFFTP A+P+S++ +ITA AG+L+CR Sbjct: 354 IGGSANPTINSQGNRFAAPKNHSAKEVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFTP-SGEGASGDSQTLSLPAKPASMVDAITASAGALSCR 446
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.077e-19 Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = -3 Query: 357 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAP-ESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNC 635 +GGSA+PTI SQGN F+A N++F KEVTK E A + EWK WNW+SEGD MVNGAFFTP ARP+SL+ + G L+C Sbjct: 293 IGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGAFFTPSGKEDSPSYAKFSSMVARPASLLKTTHPSVGVLSC 386
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = -3 Query: 363 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSL 635 +GGS +PTINSQGNR+ AP + F KEVTK + P+ +WK WNWRSEGD++VNGAFF + +S I+ IT +G L Sbjct: 324 IGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVL 414
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17 Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = -3 Query: 369 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPES-EWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAG 635 +GGS +PTINSQGNR+ AP+D KEVTK D+ + EW NWNWR+EGDLM NGAFF + +SL+ +T AG Sbjct: 321 IGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGAFFVASGEGMSSMYSKASSVDPKAASLVDQLTRNAG 410
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15 Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGS PTI SQGNR++AP+ KEVTK + A +EW W W+S+GDL V+GAFF A+P + + +T +G+LNC+ Sbjct: 336 VGGSQHPTIISQGNRYIAPHIEAAKEVTKRDYAEPAEWSKWTWKSQGDLFVSGAFFVESGGPFENKYSKKDLIKAKPGTFVQRLTRFSGALNCK 429
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15 Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = -3 Query: 465 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFT 635 +GGS PTI QGNRF+AP D F K+VTK E PES W W WRSEG+L +NGA+FT Sbjct: 349 IGGSMHPTIIHQGNRFIAPPDIFKKQVTKREYNPESVWMQWTWRSEGNLFMNGAYFT 405
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15 Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFF------TPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GG+ +PTI SQGNRF+AP + K++TK E P EWK+WNW+SEGD +NGA+F +P +++ +T AG L C+ Sbjct: 355 IGGNMNPTIISQGNRFIAPPNEEAKQITKREYTPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAWSSKPKTPLPNKFTIRPKPGTMVRKLTMDAGVLGCK 454
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14 Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAP-NDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSL-ISSITAGAGSLNCR 635 +GGS PTI S GNRF+AP + + +EVTK + A ESEWKNWNWRSE D+ +N A+F + + +S +T AG+L+CR Sbjct: 375 IGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCR 470 The following BLAST results are available for this feature:
BLAST of CN182268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182268 ID=CN182268; Name=CN182268; organism=Citrus sinensis; type=EST; length=637bpback to top |