CN182268

Overview
NameCN182268
Unique NameCN182268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 51/94 (54.26%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA+PTINSQGNR+ AP + F KEVTK  D P S WK WNWRSEGDL+ NGA+FT                 A+ SSL+  IT+ AG+L CR
Sbjct:  331 IGGSANPTINSQGNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGALPCR 424          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA+PTINSQGNRF+AP + F KEVTK   + + EWK WNWRS+GDLM+NGA+FT                 A+P+S++S +T  +G+L CR
Sbjct:  342 IGGSANPTINSQGNRFLAPGNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSGAAAPASYARASSLGAKPASVVSMLTYSSGALKCR 435          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.963e-21
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA+PTINSQGNRF AP +   KEVTK  D   +EW  WNWRSE DL+VNGAFFTP                A+P+S++ +ITA AG+L+CR
Sbjct:  354 IGGSANPTINSQGNRFAAPKNHSAKEVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFTP-SGEGASGDSQTLSLPAKPASMVDAITASAGALSCR 446          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.077e-19
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  357 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAP-ESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNC 635
            +GGSA+PTI SQGN F+A N++F KEVTK E A  + EWK WNW+SEGD MVNGAFFTP                ARP+SL+ +     G L+C
Sbjct:  293 IGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGAFFTPSGKEDSPSYAKFSSMVARPASLLKTTHPSVGVLSC 386          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = -3
Query:  363 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSL 635
            +GGS +PTINSQGNR+ AP + F KEVTK  + P+ +WK WNWRSEGD++VNGAFF                   + +S I+ IT  +G L
Sbjct:  324 IGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVL 414          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = -3
Query:  369 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPES-EWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAG 635
            +GGS +PTINSQGNR+ AP+D   KEVTK  D+ +  EW NWNWR+EGDLM NGAFF                   + +SL+  +T  AG
Sbjct:  321 IGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGAFFVASGEGMSSMYSKASSVDPKAASLVDQLTRNAG 410          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGS  PTI SQGNR++AP+    KEVTK + A  +EW  W W+S+GDL V+GAFF                  A+P + +  +T  +G+LNC+
Sbjct:  336 VGGSQHPTIISQGNRYIAPHIEAAKEVTKRDYAEPAEWSKWTWKSQGDLFVSGAFFVESGGPFENKYSKKDLIKAKPGTFVQRLTRFSGALNCK 429          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = -3
Query:  465 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFT 635
            +GGS  PTI  QGNRF+AP D F K+VTK E  PES W  W WRSEG+L +NGA+FT
Sbjct:  349 IGGSMHPTIIHQGNRFIAPPDIFKKQVTKREYNPESVWMQWTWRSEGNLFMNGAYFT 405          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFF------TPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GG+ +PTI SQGNRF+AP +   K++TK E  P  EWK+WNW+SEGD  +NGA+F                         +P +++  +T  AG L C+
Sbjct:  355 IGGNMNPTIISQGNRFIAPPNEEAKQITKREYTPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAWSSKPKTPLPNKFTIRPKPGTMVRKLTMDAGVLGCK 454          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAP-NDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSL-ISSITAGAGSLNCR 635
            +GGS  PTI S GNRF+AP + +  +EVTK + A ESEWKNWNWRSE D+ +N A+F                     + + +S +T  AG+L+CR
Sbjct:  375 IGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCR 470          
The following BLAST results are available for this feature:
BLAST of CN182268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PEL1_ARATH3.028e-2254.26Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL10_ARATH1.151e-2151.06Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH1.963e-2154.26Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL21_ARATH1.077e-1952.13Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL12_ARATH1.191e-1847.25Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL13_ARATH6.534e-1747.78Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL_LILLO1.232e-1541.49Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL59_SOLLC6.116e-1563.16Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL3_ARATH7.988e-1538.00Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL7_ARATH5.177e-1442.71Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182268 ID=CN182268; Name=CN182268; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTTTTTTTCATTAATTGAACATTATTTATTTTTATAAAAAT
ACATAGACGTATATCAAACACTTCTTTCGGCTCTTGTTTTTCTTAACCCC
CATCACAATTCTTTACAGAATCACATAATGGTGGGTTTTATACAAACAGG
CTCCACAATCTTATATACACTTGCATGTTAGGGAAAAAAAAAAACAACAT
TAACTTACAAGAATACGAATCCTACACTTGTAATTACAATTAAACTTCTT
ATTATTATTATTATTATTATTATTTATCCTTTCATTCTTCCCTCAGCCAT
TTATTATTGGGCCCAGTTTGGGGTGGTTGGGGGCACTAGCAAGGCTTGCC
TTTCCTGCAATTAAGCGAGCCAGCTCCTGCTGTGATTGAACTTATTAGTG
AAGATGGTCTTGCTCCTAAACTTGAAGCCTTAGCATAACTAGAAGATGCG
CCGGCACCCGATGGCGTAAAAAATGCACCATTTACCATCAAATCCCCTTC
GGACCTCCAATTCCAATTCTTCCATTCACTCTCCGGCGCATCCTCATATT
TAGTCACCTCTTTGTTGAATCTATCATTTGGAGCAACAAATCTATTCCCT
TGGCTGTTAATTGTAGGAGAAGCACTCCCACCGAGCG
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