CN182265

Overview
NameCN182265
Unique NameCN182265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +D    MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVT       +DA   MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + +V  L+WA T   L +AF+     + +K+I DR +GRSRGFGF+TF   ++M  A++ MN   L+GR + +N A
Sbjct:  218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + F+GGL   T + SL   F  YG I E  ++ DRET +SRGF F+TF      + A+  MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + FVGGL + TTDSSL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + F+GGL W TTD SL + F  +G++L+  ++ D  TGRSRGFGF+TF++ K + + +      +LDG+ I    A
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237          
The following BLAST results are available for this feature:
BLAST of CN182265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RB24A_XENLA4.895e-1248.68RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRPG_RAT4.895e-1243.42Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
RBM38_HUMAN1.090e-1147.37RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
HNRPG_MOUSE1.090e-1143.42Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
ROC5_NICSY1.424e-1140.7933 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM38_XENTR1.424e-1147.37RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
HNRPG_BOVIN1.424e-1143.42Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
RBM38_MOUSE1.860e-1147.37RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM24_DANRE1.860e-1147.37RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
YHKF_SCHPO3.173e-1140.79Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002C23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182265 ID=CN182265; Name=CN182265; organism=Citrus sinensis; type=EST; length=639bp
GAGGATTCATTTCATTTTTTTTTTCAAACAATTAACCAAACAGGGAGAAC
GAAACAACACAGGATAACAGGAACCGATCAAAACGACACATCATAACCCA
AGGAAAATATCAAAACACGGAACGGTAACATTCAACTCCTAATTTATCCT
ACAAAACCCTAGTTCCTCCAGCTACCGCCATCAGAAGCACCGCTCCTTGA
GTATCGGGAACCACCATCACCGCCATATCCACCGTCACGGCTGTAACCAC
CTTCACGGCGGCCACCATATCCACCGCCGCCACCTCCGTATCCGCGGCTC
CCACCGTATCCACCGCCACCACCACTTTCACGGCGTCCACCACCTCCATA
TCCACCACCGCCACGGCTTCCGTAACCGCCACCGCCACCGCCACCGCTTC
CACGGGACTGGGCCTCGTTGACTGTTATGTTACGGCCGTCCAGATTCTGG
CCGTTCATGCCTTCGATTGCGTCCCTCATCGACTTCTCATCGCGGAAGGT
AACGAATCCAAATCCTCTGGATCTTCCAGTCTCGCGATCGTTAATAATCT
TCGATTCAAGGATATCGCCGTAAGCACTGAAGGCCTCATGGAGAGAGCTG
TCAGTGGTGGCCCAGGCCAGGCCGCCTACGAAGCACCGA
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