CN182265

Overview
NameCN182265
Unique NameCN182265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + FVGGL + TTD+SL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF    + + A   MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      + A   MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = -2
Query:  426 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNG-QNLDGRNI 638
            + FVGGL+W TT  +L   F  +GDI++  ++ + E+GRSRGFGFVTF D  ++   ++  NG   LDGR I
Sbjct:    8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTI 77          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  411 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 638
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+T +SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = -2
Query:  426 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 638
            + F+GGL+W T+  SL + F  YGDI E+ ++ D  T RSRGFGFVTF D  S+ D +       LDG+ +
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV-DKVLTQGTHELDGKKV 99          
The following BLAST results are available for this feature:
BLAST of CN182265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RBM24_HUMAN3.173e-1146.05RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
HNRGT_MACFA3.173e-1143.42RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]
HNRGT_HUMAN4.144e-1143.42RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
RB27C_DROME5.412e-1145.83Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
RBM38_XENLA7.068e-1146.05RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 ... [more]
MSIR6_DROME7.068e-1145.07RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002C23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182265 ID=CN182265; Name=CN182265; organism=Citrus sinensis; type=EST; length=639bp
GAGGATTCATTTCATTTTTTTTTTCAAACAATTAACCAAACAGGGAGAAC
GAAACAACACAGGATAACAGGAACCGATCAAAACGACACATCATAACCCA
AGGAAAATATCAAAACACGGAACGGTAACATTCAACTCCTAATTTATCCT
ACAAAACCCTAGTTCCTCCAGCTACCGCCATCAGAAGCACCGCTCCTTGA
GTATCGGGAACCACCATCACCGCCATATCCACCGTCACGGCTGTAACCAC
CTTCACGGCGGCCACCATATCCACCGCCGCCACCTCCGTATCCGCGGCTC
CCACCGTATCCACCGCCACCACCACTTTCACGGCGTCCACCACCTCCATA
TCCACCACCGCCACGGCTTCCGTAACCGCCACCGCCACCGCCACCGCTTC
CACGGGACTGGGCCTCGTTGACTGTTATGTTACGGCCGTCCAGATTCTGG
CCGTTCATGCCTTCGATTGCGTCCCTCATCGACTTCTCATCGCGGAAGGT
AACGAATCCAAATCCTCTGGATCTTCCAGTCTCGCGATCGTTAATAATCT
TCGATTCAAGGATATCGCCGTAAGCACTGAAGGCCTCATGGAGAGAGCTG
TCAGTGGTGGCCCAGGCCAGGCCGCCTACGAAGCACCGA
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